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Detailed information on CNT30355843


BLAST search results

BLAST vs Swiss-Prot:
sp|P17786|EF1A_SOLLC, E-value = 5e-64

BLAST vs NONCODE:
NONBNAT001751, E-value = 1e-85

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30195181Lactuca sativaPisum sativum27.0548.188.16228forward
CNT3093993Lactuca sativaSolanum tuberosum27.0543.6886.84228forward
CNT30288144Lactuca sativaTriticum aestivum26.9361.3586.78227forward
CNT30224987Lactuca sativaHordeum vulgare34.0597.2985.02287forward
CNT30386294Lactuca sativaTriticum turgidum26.9361.6886.78227forward
CNT30509820Lactuca sativaSolanum lycopersicum26.5710086.16224forward
CNT30608684Lactuca sativaGossypium raimondii27.1654.3989.52229forward
CNT3067093Lactuca sativaLeersia perrieri27.1651.2386.46229forward
CNT30646927Lactuca sativaRosa chinensis26.9367.5685.9227forward
CNT30120727Lactuca sativaCitrus clementina27.0541.4589.47228forward
CNT30116334Lactuca sativaOryza nivara27.1637.5486.03229forward

Expression of CNT30355843

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MMHLNRLDFSGQPCWSEGHNHTRLDDTCLNTSHWHSSNTTDLVNILKW*

>peptide 2 (44 aa)
MVIPRSRSALSLSSTHAYLKERLFISAASFSNLSITRLSIPPSL*

Sequence

>CNT30355843
TTTTAAAAACCAACTCATGCCATAGACCACTATAGATTTAAACCACAACAAAAGTCTTCAAACCTGGGAAAGTTTCCAACATAACGAAACTTCCCAGATC
CAATACCAAAAACTCTTCAACAAAATATAAGATTGTCCAAAACTAGTAATCCAAACAGACAGAAAATAAAAAGACTCGATCACCAAAACACAACACCTAT
CATATCACTTGACACCCTTCTTGGCTGCGGCCTTGGTCACCTTAGCTCCAGTCGGGTCCTTCTTGTCAACACTCTTGATCACACCAACAGCAACAGATCA
TCCTTGGAGTTTGAGGCAACATACCCACGCTTGATATCCTTCACAGCAACATTCTTAACATTGAACCCAACATTGTCACCAGGAAGAGCTTCGGTCAAAG
CTTCATGATGCATCTCAACAGACTTGACTTCAGTGGTCAACCCTGTTGGTCCGAAGGTCACAACCATACCAGGCTTGATGATACCTGTCTCAACACGTCC
CACTGGCACAGTTCCAATACCACCGATCTTGTAAACATCCTGAAGTGGTAGACGGAGTGGCTTGTCTGTGGGTCTCTTTGGCTCGTTGATCTGGTCAAGA
GCTTCAAGAAGGGGCAATATCGATGGTAATACCACGTTCACGCTCGGCCTTAAGTTTGTCGAGCACCCATGCGTATTTGAAAGAACGTTTGTTCATCTCA
GCAGCTTCCTTCTCGAACCTCTCGATCACACGCTTGTCGATTCCTCCAAGCTTGTAGATCAAGTGACCAGTGGTTGTTGACTTGCCGGAGTCGACATGTC
CGATGACGACAATGCTGATATGAATCTTTTCCTTACCCATCCT