Detailed information on CNT30296842


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZT91|EFTM_ARATH, E-value = 4e-10

BLAST vs NONCODE:
NONCQUT008675, E-value = 6e-87

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224163Triticum aestivumHordeum vulgare35.8737.2692.8250forward
CNT30509929Triticum aestivumSolanum lycopersicum21.5270.0992.67150forward
CNT30146188Triticum aestivumMedicago truncatula39.0234.6587.13272forward
CNT30440878Triticum aestivumAegilops tauschii34.8630.9296.71243forward
CNT30647369Triticum aestivumRosa chinensis37.1628.5988.42259forward
CNT30203418Triticum aestivumHelianthus annuus30.5652.0887.79213forward
CNT30355697Triticum aestivumLactuca sativa40.7534.5988.03284forward
CNT30147611Triticum aestivumBrachypodium distachyon28.8433.595.52201forward
CNT30101053Triticum aestivumOryza rufipogon77.1964.7490.33538forward
CNT3050518Triticum aestivumCucumis sativus36.0140.4286.45251forward

Expression of CNT30296842

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MGLVGIIFTMPASPFLRNLGRASSSLPDRLSILVTTIPGLMTPVSTRPTGTVPMPPIL*

>peptide 2 (38 aa)
MAALVTLAPVGSFFSTPLMTPTATVCLMSRTAKRPRGG*

>peptide 3 (38 aa)
LRSFHVLPKAKINDSTQMTHQQGAYHTALTVAKLALNY*

Sequence

>CNT30296842
CTCAGAAGCTTCCATGTTTTGCCAAAAGCCAAAATTAACGACAGTACTCAAATGACACATCAACAGGGCGCATATCACACGGCGCTAACAGTAGCAAAAC
TTGCACTAAACTACTAGAGATCTCAAAAGCAGACATAGATGGATTCAGGTAAACGCCTCATTTCTTCTTGATGGCAGCCTTGGTCACCTTGGCGCCGGTT
GGGTCCTTCTTCTCCACACCCTTGATGACACCAACAGCCACAGTTTGCCTCATGTCACGGACAGCAAAACGACCAAGAGGTGGGTAAGTAGCAAAGGTCT
CCACAACCATGGGCTTGGTGGGAATCATCTTCACTATGCCAGCATCACCATTCTTGAGGAACTTGGGCAGGGCCTCCAGCTCCTTACCAGATCGCCTGTC
GATCTTGGTGACAACCATACCAGGCTTGATGACACCAGTCTCAACACGGCCAACAGGCACAGTTCCAATGCCACCAATCTTGTAAACGTCCTGGAGGGGA
AGACGGAGGGGCTTGTCTGAGGGCCTCTTGGGCTCGTTGATCTGGTCAAGCGCCTCAAGAAGGGTTGGGCCCTTGTACCAGTCAAGGTTGGTGGACCTCT
CAATCATGTTGTCACCCTCAAACCCAGAGATGGGGACGAAGGGAACCTTGTCAGGGTTGTAGCCGACCTTCTTCAGGTAGGAAGAGACCTCCTTGAC