CANTATAdb - search

Detailed information on CNT30350899

BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONBNAT001751, E-value = 3e-133

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30546678	Eragrostis tef	Ipomoea triloba	45.34	37.62	87.75	506	forward
CNT3020462	Eragrostis tef	Citrullus lanatus	34.86	34.73	87.4	389	forward
CNT30629687	Eragrostis tef	Vigna unguiculata	28.67	16.2	87.19	320	forward
CNT30712097	Eragrostis tef	Glycine max	38.17	35.71	86.85	426	forward
CNT30387906	Eragrostis tef	Triticum turgidum	46.86	53.92	87.38	523	forward
CNT30721805	Eragrostis tef	Triticum spelta	21.42	16.55	92.47	239	forward
CNT30355697	Eragrostis tef	Lactuca sativa	41.31	56.15	85.9	461	forward
CNT30148140	Eragrostis tef	Brachypodium distachyon	32.71	96.05	90.41	365	forward
CNT30580076	Eragrostis tef	Echinochloa crusgalli	35.57	30.01	91.94	397	forward
CNT3050518	Eragrostis tef	Cucumis sativus	30.56	54.91	85.34	341	forward

Expression of CNT30350899

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MGLVGIILTIPASPFFRNLGSFSSSLPDRLSILVWSSANLTAMCEVWQSSTGA*

Sequence

>CNT30350899
AGGCGAATCAAAGTTCAGTCTCATAGCATCCACTGCTCAAATAACACGACAGTATTTTAAGGACGGATAAAGTACGAAGAACTCGATGACACTAAACAAA
ACTTAAACAGGCACTACGACCCATAATAGGAGCCATCCATCAGACGCCTCATTTCTTCTTGGCAGCAGCCTTGGTAACCTTGGCACCGGTGGGGTCCTTC
TTCTCCACGCTCTTGATGACACCAACAGCAACAGTCTGCCTCATGTCCCGGACAGCAAACCGACCAAGAGGGGGGTACTGAGAGAAGGTCTCAACAACCA
TGGGCTTGGTGGGAATCATCTTAACCATACCAGCATCACCGTTCTTCAGGAACTTGGGCTCCTTCTCCAGCTCCTTGCCAGATCGTCTGTCGATCTTGGT
CTGGAGCTCAGCAAACTTGACAGCAATGTGCGAGGTGTGGCAGTCCAGCACCGGGGCATAGCCGTTGCCGATCTGGCCAGGGTGGTTCATGATGATAACC
TGGGAGGTGAAGCTGGCCGCCTCCTTAGCAGGGTCATCCTTGGAGTTTGAGGCAACATAACCACGCTTGATATCCTTCACGGCAACATTCTTCACGTTGA
AGCCCACATTGTCACCAGGAAGAGCCTCCTGGAGAGCCTCGTGGTGCATCTCAACAGACTTGACCTCAGTTGTCAGGCCGCTGGGACCAAAGGTAACCAC
CATACCAGGAAGAGCCTCCTGGAGAGCCTCGTGGTGCATCTCAACAGACTTGACCTCAGTTGTCAGGCCGCTGGGACCAAAGGTAACCACCATACCAGGC
TTGAGGACACCAGTCTCCACACGGCCCACAGGGACAGTTCCAATACCACCAATCTTGTACACATCCTGAAGGGGAAGACGCAGGGGCTTGTCTGAGGGCC
TCTTGGGCTCGTTGATCTGGTCAAGAGCCTCCAGCAGAGTGGGGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCAAATCC
AGAGATGGGAACGAAGGGGATCTTGTCAGGGTTGTAGCCGACCTTCTTGAGGTACGAAGAGACCTCCTTCACAATCTCATCGTAACGGGCCTTGGAGTAC
TTGGGAGTGGTGGCAT