Detailed information on CNT3076676


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30146188Brassica junceaMedicago truncatula30.243.8289.83344forward
CNT30265127Brassica junceaBrassica rapa13.6160.7894.19155forward
CNT30203418Brassica junceaHelianthus annuus35.8299.7683.33408forward
CNT30355697Brassica junceaLactuca sativa67.2593.385.12766forward
CNT30644842Brassica junceaCannabis sativa21.6961.1488.26247forward
CNT30723975Brassica junceaLupinus angustifolius70.7669.9784.24806forward

Expression of CNT3076676

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MMITWEVKLAAPLAGSSLELDATYPRLRSLTATFLTLNPTLSPGRAKVTTIPGLSIPVSTRPTGTVPIPPIL*

>peptide 2 (40 aa)
MWLRHLRSRTQLRERSSDGDETKLQHKQATKYQTNKTKLK*

>peptide 3 (78 aa)
MFDSRHKANNRRNIVIFIISKHPKYFRNKKQKKKQEASMQCGSATSDQEPSYENVVLTETKRSCNTNKQPNTKLTKQN*

>peptide 4 (86 aa)
MTPTATVCLMSLTAKRPRGGYSEKVSTTMGLVGVIFTIPASPFFKNLGSFSISLPERLSILVRISENFTAMWEVWQSRTGAYPLPI*

Sequence

>CNT3076676
TCATATTCAAACTAGTTGACAGATGCGATGTTTGATTCACGACACAAAGCTAATAACCGCAGGAATATTGTCATATTCATAATATCAAAACATCCAAAAT
ATTTCAGAAACAAAAAGCAAAAGAAAAAACAGGAAGCTAGCATGCAATGTGGCTCCGCCACCTCCGATCAAGAACCCAGTTACGAGAACGTAGTTCTGAC
GGAGACGAAACGAAGCTGCAACACAAACAAGCAACCAAATACCAAACTAACAAAACAAAACTAAAATAGTCTTTCGATTCAACTGCGGATGATAGAGTTT
TGCTCAAGGTACTTTATTTGGCACCCTTCTTGACGGCAGCCTTGGTGACCTTGGCTCCGGTTGGGTCCTTCTTGTCAACGCTCTTGATGACACCGACTGC
AACAGTCTGCCTCATGTCCCTCACGGCAAAACGTCCAAGGGGTGGGTACTCAGAGAAGGTCTCGACAACCATGGGCTTGGTCGGAGTCATCTTCACCATA
CCAGCATCACCATTCTTCAAAAACTTGGGCTCCTTCTCGATCTCCTTACCAGAACGCCTGTCAATCTTGGTGAGGATCTCAGAGAACTTCACCGCAATGT
GGGAGGTGTGGCAATCAAGAACTGGCGCGTATCCGTTACCGATCTGACCAGGGTGGTTCATGATGATAACCTGGGAAGTGAAGTTGGCAGCTCCCTTGGC
GGGATCATCCTTGGAGTTGGATGCAACATACCCACGCTTAAGATCCTTGACAGCAACGTTCTTAACATTGAATCCCACGTTGTCACCTGGAAGAGCAAAG
GTCACAACCATACCGGGCTTGAGCATACCGGTCTCGACACGACCCACTGGCACCGTTCCAATACCACCAATCTTGTAGACATCCTGAAGTGGCAGACGGA
GGGGCTTGTCTGATGGCCTCTTGGGCTCGTTGATCTGGTCAAGGGCCTCAAGGAGAGTTGGTCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCAT
GTTGTCACCCTCGAAACCAGAGATGGGCACGAATGGGATTTTGTCAGGGTTGTACCCAACCTTCTTCAAGTAGGAAGACACCTCCTTGATGATCTCATCG
TACCTAGCCTTGGAGTACTTGGGGGTTGTGGCATCCATC