Detailed information on CNT30342067


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372512Eragrostis tefArabidopsis thaliana20.475.7186.9669reverse complement
CNT30402915Eragrostis tefBeta vulgaris20.1815.8588.2468forward
CNT30630696Eragrostis tefVigna unguiculata21.071.9890.1471forward
CNT30199347Eragrostis tefPisum sativum20.1811.5186.7668forward
CNT3045945Eragrostis tefPrunus dulcis20.4710.8586.9669reverse complement
CNT30568217Eragrostis tefActinidia chinensis20.187.8886.7668reverse complement
CNT3059711Eragrostis tefArabidopsis lyrata20.474.0186.9669reverse complement
CNT30611129Eragrostis tefArabis alpina21.077.2787.3271reverse complement
CNT304409Eragrostis tefZea mays22.558.4284.2176reverse complement
CNT30128660Eragrostis tefCorymbia citriodora20.183.9889.7168forward
CNT30714679Eragrostis tefMalus domestica golden20.1810.6986.7668reverse complement
CNT30478244Eragrostis tefArabidopsis halleri20.777.787.1470reverse complement
CNT30113362Eragrostis tefFicus carica20.474.7686.9669reverse complement

Expression of CNT30342067

Peptides detected in this lncRNA

>peptide 1 (63 aa)
RRTTMRARRRGWRGRRGGGGRRGASARGPKALVEGRVPPVSQHRSDFPSLFARYAYNISGDLV*

>peptide 2 (45 aa)
MARSARRRRSSRSLREGAQGFGRRAGSSRLPAPKRLPQLVCEICI*

Sequence

>CNT30342067
CGGCGCACGACGATGAGAGCTAGAAGGAGGGGATGGCGCGGTCGGCGCGGCGGAGGAGGTCGTCGCGGAGCCTCCGCGAGGGGGCCCAAGGCTTTGGTCG
AAGGGCGGGTTCCTCCCGTCTCCCAGCACCGAAGCGACTTCCCCAGCTTGTTTGCGAGATATGCATATAACATATCAGGGGATTTAGTCTAGTGGTAAGA
TATTCGCTTAGGGAGCGAAAGGTCCCGAGTTCAATTCTCGGAATCCCCAAGCTCAAACCTTTTGGCATTTTGAGGAAAGGGAAATGGTCATGTATGATGT
TCTGAACTTTAGATAATGAGGACAATGTAATCTGGAC