Detailed information on CNT3045945


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30403020Prunus dulcisBeta vulgaris11.7927.4710075reverse complement
CNT30342067Prunus dulcisEragrostis tef10.8520.4786.9669reverse complement

Expression of CNT3045945

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MMGKIKTSLQTANLAQVHGFLAKMEQEGKKIWQKGHSENRTRDLSHPKRESYH*

>peptide 2 (36 aa)
MCLWIWDLTFNVVSVTVTVKYINCGPHKMNYLIKMS*

>peptide 3 (42 aa)
KQSPEPTVKYQRFLSALKLLFSSKLQKPTTQKKFENLIHVLN*

>peptide 4 (50 aa)
MDFWLKWNKKGKKFGKRGIPRIELGTSRTQSENHTTRPNALSMIFMMCSM*

>peptide 5 (78 aa)
AESRAHSEISKIPFGFKAPFQLKTSKTHHPKEIRKSHSCLKLKLCTNSNCRIPEFSFPFSSVCSFFSIFGQPTFFLVR*

Sequence

>CNT3045945
AAGCAGAGTCCAGAGCCCACAGTGAAATATCAAAGATTCCTTTCGGCTTTAAAGCTCCTTTTCAGCTCAAAACTTCAAAAACCCACCACCCAAAAGAAAT
TCGAAAATCTCATTCATGTCTTAAATTAAAACTCTGCACAAACTCAAACTGCAGAATCCCAGAATTTTCTTTTCCCTTCTCCTCTGTGTGTTCTTTTTTC
TCAATTTTCGGTCAGCCCACCTTTTTTCTTGTGCGTTGAAGTTGATGATGGGAAAGATCAAGACTTCTTTGCAAACTGCAAACTTAGCTCAGGTACATGG
ATTTCTGGCTAAAATGGAACAAGAAGGGAAAAAAATTTGGCAAAAGGGGCATTCCGAGAATCGAACTCGGGACCTCTCGCACCCAAAGCGAGAATCATAC
CACTAGACCAAATGCCCTGTCAATGATATTCATGATGTGCAGTATGTAATTATTTAATATAATATTGGTTTTCTTTTGCCATCCTATTGATCTGGTTTCT
TTTCTTTTCTAGTCTACATGTGCCTGTGGATATGGGATCTGACCTTCAATGTAGTTTCTGTAACTGTTACAGTAAAATACATTAATTGTGGTCCACACAA
GATGAACTATTTAATCAAAATGTCCTGATTTGTGCA