« Back to Arabidopsis lyrata search


Detailed information on CNT3059711


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372943Arabidopsis lyrataArabidopsis thaliana27.8720.3489.58480forward
CNT30499788Arabidopsis lyrataCoffea canephora4.2422.5310073reverse complement
CNT30403020Arabidopsis lyrataBeta vulgaris4.3627.4710075reverse complement
CNT30611088Arabidopsis lyrataArabis alpina4.4122.4297.3776forward
CNT30653503Arabidopsis lyrataRosa chinensis4.2428.8510073reverse complement
CNT30214655Arabidopsis lyrataHelianthus annuus4.3634.5610075reverse complement
CNT30342067Arabidopsis lyrataEragrostis tef4.0120.4786.9669reverse complement

Expression of CNT3059711

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MPCVYYVVQLMPPISILSFHSEICCSVCFIGRYLIEILFVFLQLILCESGCLQYMMVLSI*

Sequence

>CNT3059711
CGTGAGGTTTCGCGGAGTTTGGAGAATCGTTACAGCTTAAAGCGAGAATCAATCAGTGGCGCGTTATGCGTTTCTTCTTCTTAGGTGGGCACGTATTTGC
TCTTCAATGCTTTTGTAGGTATTTTCCTATCGCTAAGAATGTAATGTAGATGTATGTTGCTTAGTTATCGCCTCTCCTAGGTTAAAATTAAGGCTGAAAT
GTCTCTGTGTCCTATAATTTTGAGCTGCCTATTAGACCTCCTTATGCTTGAAACTCAATGAAGGGCATTCTTTGAATAGAACCTAGGGCCTCCGTAACTT
GTCCTAAATGCTTTGTTGCCGATGTAATTGGGTTCAAGCATTCTGTTTTTGGTGTTTAAAATGATTTGTTGAAAAAGGAATGAACTTTCCATTGTAAATT
TACACCCAAGGCTTGTCCTAATTCCTATTGAAGGGTCTCGTGCTTTGATGAATCTGGAAACTTATATAATTGGTTTACATTCAGTCTATTTTATTTCTGT
ATCTTGAAGCTGTTACTGAGACCTATCAGTTGATTTTTTGGTGGATTGTTTGTGAATCGATGTTGGTGGGGAGTTACTTTTAAGTAAATCAACATTGTTC
AAATGATGTATGTGATCTGTGAAAAATCCGGTAGCAAGTAGAGATTGTATGCAAAAAGTCTTAGCTGGCATTTAGAGCATATGTGTTGCAAAAATCCAAA
GGGGCATTCCGAGAATCGAACTCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCAAATGCCCTGTGTTTATTATGTTGTTCAGTTAATGC
CTCCTATTAGCATTCTCTCTTTTCATTCGGAGATTTGTTGCTCCGTTTGCTTTATCGGTAGATACTTGATAGAAATTCTTTTTGTGTTTCTCCAGCTCAT
TCTTTGTGAATCTGGATGCTTGCAGTACATGATGGTCCTCTCTATATGAAGGGTACTGGTTGAAAAGATTTATTGATGGGACGTGAAATAGCGGTAAGTT
CTTCTTTTCCTTTGCATTAAGTACTTAATAACTTCTCTTGCTGCAACTGAAAGGTAATATATGGTTTTTACTTGTATCAAGATCTGCGATAGAACTAGGA
CTTAATAGAGATCTGATTTCCGAGGCAATTGTCTGCTTGAATTTAGAGCAACTACGTTAAAAAATTCAATGGGGCATTCCGAGAATCGAACTCGGGACCT
CTCGCACCCAAAGCGAGAATCATACCACTAGACCAAATGCCCTGTATTTGAATGTCCCCATTGAAGCATTTTGTTGTTGTGTAATCCTGTGGAAAAGAGA
ATTCATGCTTCACTCCGTTATTACAGGAAATTTAGTCTTGGGGGGTTTGTTTACCTTTTGAGGATTCTATTCGTGATGAAGCTGGCAACATGCACTCATT
CGTTGTGATCGGGCTGCTTACAAAACTTGATCCTATGTGAAGATTACTGGTTAAGATTTATTACTTTGGATGTGAAAGAGCGGAAATTTACTCTTTGAGG
ATTTACCTTTCAAGGATTCTATTCGTGATGAAGCTGGCAACATGCACTCAATCTTGATGTATTTGGCGAACTGTATGAAGTTTACTGGTTAAAAAGACTA
ATATACTAATTGGACGTGAAACAACGAAGGGAGGTGTTTCTATTTGAAGAGATCAAAGTTATTAGATGTGGAAGCCATACTTTGGTGATACACCAGCTCC
CTTGGTTAGGTTTCAGCAGTTG