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Detailed information on CNT30372512


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30499788Arabidopsis thalianaCoffea canephora5.9622.2210072reverse complement
CNT30403020Arabidopsis thalianaBeta vulgaris6.2927.8410076reverse complement
CNT30611088Arabidopsis thalianaArabis alpina5.8720.9498.5971forward
CNT30653503Arabidopsis thalianaRosa chinensis6.0428.8510073reverse complement
CNT30205405Arabidopsis thalianaHelianthus annuus6.0432.8810073reverse complement
CNT30342067Arabidopsis thalianaEragrostis tef5.7120.4786.9669reverse complement

Expression of CNT30372512

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MPCFLILLISSLSQFVCCFLQLILFGSGFLQKMTVPPT*

>peptide 2 (39 aa)
ERIHWIIRCPVYLLTHEALAHQLFDEIPKPKNFAHRDLD*

>peptide 3 (41 aa)
MPTVIFEEYEQKDNLIWKTFPSWNLNSSLTKLMGHEMAEFS*

>peptide 4 (59 aa)
MKWQNSASDVLCSIHYPKKCFLAPRRESQGATSILILLDAFQQFISKVIMEKCFLVYPC*

Sequence

>CNT30372512
GTGAGCGTATCCATTGGATTATTCGTTGTCCGGTTTATTTGCTGACTCATGAGGCACTCGCCCACCAGTTGTTCGACGAAATTCCTAAACCAAAAAATTT
CGCCCACAGAGATTTAGATTGAGTCTACCTGAAATGTGGGATAAATTTCGTATTTTGCGTGAGGTTTCGCGGAGTTTAGAGAATCAGTGGCGCACTGGCG
CGTGATGCGTTTTCTTCTACTCTTTTGGGTGAATCAACAATGTTCAAATGATGTATGTGATCTGTTAAAAGTCCGATAGCAAATACAGATTGTATGCAAT
AAGTCTTGGCAGGCATTTAGAGCATATGTTTTACAAAAAGACAATGGGGCATTCCGAGAATCGAACTCGGGACCTCTCGCACCCAAAGCGAGAATCATAC
CACTAGACCAAATGCCCTGTTTTCTTATCCTTTTGATCAGTTCTTTATCACAATTCGTTTGCTGTTTTCTCCAGCTCATTCTTTTTGGATCTGGCTTCTT
ACAAAAGATGACAGTCCCCCCTACATGAAGTTTACTGAGAGGACGTGACAACGCTCATTTTTGGTGAAGCTGGCTGCGTACAAAACATTATGGTCCCCCC
TTTATGAAGGTTACTGGTTAAAAAGATTTGTTGATTGTACGTGAAGACCGATCATACTTTGTGAAATCGGCAGCTTACAAAATGTGAAGGGCCGACCTAT
ATGTAGTTACTCGTTAAAACAGTGCACAATCTCTGGCAGCATACAAAACGTCTGTCTTTATTAATTAAAAAGACATATAGATTGGACGCGGAACTGTGGA
AATTCACTCTTGATGGTTTGTTTATCTTTTGAGGGCTCTATTCGGGATTAAGCAGGCAAGATGCAGTAAATGCCCACTGTTATCTTTGAAGAATATGAAC
AAAAGGACAACCTTATATGGAAAACATTTCCTAGCTGGAACTTAAATAGTTCGCTTACAAAGTTAATGGGGCATGAAATGGCAGAATTCAGCTAGCGATG
TTCTGTGTTCAATCCATTATCCAAAAAAGTGTTTTCTAGCTCCACGACGTGAAAGCCAAGGTGCAACTTCTATTCTCATTTTACTTGATGCATTTCAGCA
GTTTATATCAAAAGTCATAATGGAAAAATGTTTTCTAGTTTACCCTTGCTAAAAATTGAAGGGAAATGCATGTGAAAATGTTGAGATTACGGCAAAAATT
CAATGGGGC