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Detailed information on CNT304409


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30499788Zea maysCoffea canephora7.9722.2297.2272reverse complement
CNT30403020Zea maysBeta vulgaris8.4227.8497.3776reverse complement
CNT30611088Zea maysArabis alpina7.8620.9495.7771forward
CNT30653503Zea maysRosa chinensis8.0828.8597.2673reverse complement
CNT30214655Zea maysHelianthus annuus7.9733.1897.2272reverse complement
CNT30342067Zea maysEragrostis tef8.4222.5584.2176reverse complement

Expression of CNT304409

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MTAVCGVLGHRSASSNLQALELETPPTGHPLPAIDLHPQSTHRKVALDISCSNSSTKIAFNTWDE*

>peptide 2 (63 aa)
YLSRSPAVQRIVLQRIEAASDQHICIHRPLLGFQEIGCAVATGLSLRAGHHFRERRGYLRCCG*

>peptide 3 (59 aa)
MRTRLEQQRSLANLISLNIKKTKKRGIPRIELGTSCTQSKNHTTRPNALLCFTFFSISI*

>peptide 4 (30 aa)
TFLVLQPFSVLFSSASKLPLTNIFASIGHC*

Sequence

>CNT304409
TACCTTTCTCGTTCTCCAGCCGTTCAGCGTATTGTTCTCCAGCGCATCGAAGCTGCCTCTGACCAACATATTTGCATCCATCGGCCACTGCTAGGGTTCC
AAGAAATTGGGTGTGCTGTGGCGACCGGGCTTTCCCTACGGGCTGGTCATCATTTTCGGGAGCGTCGTGGCTACCTCCGGTGCTGCGGCTAGCGCGACTA
GGCCAGATCGACCCAGCGCGATGACGGCTGTGTGCGGCGTCCTCGGACATCGCTCCGCCAGCTCAAATCTCCAAGCGCTCGAGCTCGAAACTCCTCCAAC
CGGTCATCCGCTGCCAGCAATCGACCTCCATCCGCAGAGCACTCACCGAAAGGTGGCTCTGGATATCTCCTGCTCTAACAGCTCCACAAAAATTGCATTC
AACACTTGGGATGAGTGACCGACCGAGAAGTTTTCTCGGGTGCACACGAGTGAAGTCAAAGTACGCACAAAAGACTCGTGTTAGTCTGTGGGGATGATAT
ATGATCGTAGAGGGTTGCTGGGAGTAAGTATCGCATAGCGGCTCGATGCAGTAGATGGTCGGGGTCGGGGAGGGGGCGTGGAGTGGCACGTGACCACGGT
CTCGACGGCGCGCTGCTCCAACAAGTGGAACGTGTTCATTTCTTGATGAGGACACGTTTGGAGCAGCAGAGATCTTTAGCCAATCTTATTAGTTTGAACA
TTAAAAAAACAAAAAAAAGGGGCATTCCGAGAATCGAACTCGGGACCTCTTGCACCCAAAGCAAGAATCATACCACTAGACCAAATGCCCTGTTATGTTT
TACTTTCTTTAGTATAAGTATATGACAAAAACACTGTTTCGCAATTGTCTGGAAATTCTAAGAATCGTACCACACTACCACTATACCAAATGCTCTGATG
TTG