Detailed information on CNT30342066


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30371697Eragrostis tefArabidopsis thaliana22.3411.2990.4863reverse complement
CNT30499852Eragrostis tefCoffea canephora24.474.8986.9669reverse complement
CNT30618238Eragrostis tefSesamum indicum25.181.0487.3271reverse complement
CNT30381399Eragrostis tefManihot esculenta22.345.5987.363forward
CNT30562470Eragrostis tefActinidia chinensis24.475.486.9669reverse complement
CNT30235275Eragrostis tefBrassica oleracea24.113.1686.7668forward
CNT30263434Eragrostis tefBrassica rapa22.344.8387.363forward
CNT30614190Eragrostis tefArabis alpina22.342.7287.363reverse complement
CNT30205405Eragrostis tefHelianthus annuus24.1130.6389.7168forward
CNT30429028Eragrostis tefPapaver somniferum24.475.7186.9669forward
CNT30113311Eragrostis tefFicus carica24.113.8186.7668reverse complement
CNT30724605Eragrostis tefLupinus angustifolius24.114.3186.7668reverse complement
CNT3065569Eragrostis tefSelaginella moellendorffii24.117.6186.7668forward

Expression of CNT30342066

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MARSARRRRSSRSLREGAQGFGRRAGSSRLPAPKRLPQLVCEECI*

>peptide 2 (63 aa)
RRTTMRARRRGWRGRRGGGGRRGASARGPKALVEGRVPPVSQHRSDFPSLFARNAYSTAGDLV*

Sequence

>CNT30342066
CGGCGCACGACGATGAGAGCTAGAAGGAGGGGATGGCGCGGTCGGCGCGGCGGAGGAGGTCGTCGCGGAGCCTCCGCGAGGGGGCCCAAGGCTTTGGTCG
AAGGGCGGGTTCCTCCCGTCTCCCAGCACCGAAGCGACTTCCCCAGCTTGTTTGCGAGGAATGCATATAGCACAGCTGGGGATTTAGTCTAGTGGTAAGA
TATTCGCTTAGGGAGCGAAAGGTCCCGAGTTCAATTCTCGGAATCCCCAAGCTCAAACCTTTTGGCATTTTGAGGAAAGGGA