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Detailed information on CNT30562470


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30342066Actinidia chinensisEragrostis tef5.424.4786.9669reverse complement

Expression of CNT30562470

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MKFRSRGKKEGTRITGIPFKKRGKKDRTFNLKFASQDSK*

>peptide 2 (40 aa)
MTIKGQVQSCIILSWISLLQDHNSSNQIFFVDRVVDLFML*

>peptide 3 (33 aa)
MRDANKISWYQYLLLVASQYCDKYSSQEPRILE*

>peptide 4 (38 aa)
MKRFQPVSMLRIFPTVSRKPNGTIPLALSFSSRRTKVL*

Sequence

>CNT30562470
TGCACTTTGATTCTACGTAAAATGATTTTTTTTCTTGTGCAAATATGTTAAATTAGTTAGGACGGATATCCTCTAAAGTCCAACGGCCTCTCTCGCCAAA
TATCTAACTGAACTTATTATATAAACCCAAAAAAATTAAAAATAAAGAGAAGGTAACGGAAATTGGATAGTTATGCCCTTCGTATTTATTTTTTGAGGGA
ATATTTAAAGTGGATCATAAAAGGTGAATTTCTACAGAGACTCTCTCTCTCTTCCCAAAATCGTGAGCAAATATGAAGAGATTTCAGCCAGTTTCTATGC
TCCGTATATTTCCCACTGTTTCTCGGAAACCAAACGGAACGATTCCTCTCGCCCTCTCGTTTTCTTCTCGTAGAACTAAGGTTTTATGAACAAGTGATGA
CGATCAAAGGACAGGTCCAATCCTGTATCATCTTATCTTGGATTTCTCTGCTACAAGACCATAATTCTAGCAATCAGATTTTTTTCGTTGATCGCGTGGT
TGATTTGTTCATGCTATGAGGGACGCAAATAAAATATCATGGTACCAATATCTGCTACTTGTTGCTTCTCAATATTGTGATAAATATTCTAGTCAGGAAC
CACGTATATTGGAATGACTAACATTTTGGTTGATTTTATATTATCGTACGCTCCTGGAGGTTTGGACAAAATCACAGAGCAGTGGTCTAAATGAAGTTAT
AGGTTTGTCTGTTTTACATGCTTGCATCAACCTCTGCTGCTTGTTTCTTCTCAATGTACAATGAAGAATCTTGACAGAATTGTATAATGAAATTCAGATC
GAGGGGAAAAAAAGAGGGGACCAGAATCACAGGTATCCCGTTCAAAAAGAGGGGAAAAAAAGATAGAACTTTTAATTTGAAATTCGCTAGTCAAGATTCC
AAATAAAATCACAGCACTGACCTTAAAAAAAGGTTAATGAATTCACCAACTCTTGTGGGGCATTCCGAGAATCGAACTCGGGACCTCTCGCACCCAAAGC
GAGAATCATACCACTAGACCAAATGCCCAGATGCAAAGAGTGCAGTTTCAATAATTTATTTAATGTTCTTTATGTTACCTCTAAACTTCTAAAAACTGGC
TGAATGAGTTATCTTAAGCAAATTTCACATAAGGGGTAGGTTATGTATCCAAGTGATATTATGAGACTACCTTATTTGAGTATGGAGTAATTCATTCGGT
AAGTTATGGAGTGTACCTAGCATCATTGTAAATACTTGTAACCGATTCACTCAAAAGAATAATATTTTTCTCGTACA