« Back to Brassica rapa search


Detailed information on CNT30263434


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30499788Brassica rapaCoffea canephora5.622.5310073forward
CNT30403020Brassica rapaBeta vulgaris5.5226.3710072forward
CNT30611088Brassica rapaArabis alpina5.8322.4297.3776reverse complement
CNT30653503Brassica rapaRosa chinensis5.5228.4610072forward
CNT30214655Brassica rapaHelianthus annuus5.7534.5610075forward
CNT30342066Brassica rapaEragrostis tef4.8322.3487.363forward

Expression of CNT30263434

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MLNCSKTFNAKCLKANLKNSLRRQHAYLCMTAIN*

Sequence

>CNT30263434
CTCCTATTCAGACTATAATATTTAGTTTTAAGTATACAGCGACCTAACATCTCAACAATATTCAATTACAGACAATCCACCTTTGCTACTAAGCCTTATA
GAGTTATCTAACAGATCTAGATCTGAAAAGTAGCTTTCTTTTTAATTATCTAAAGTAACAAATTTCTCACCAGATCAATGAATTAACTAAAGGAGTCTGA
ACTTACATGAACTGTATGTTGCCAGCTACATGAAGAACAAACCCTCAAGAGGAAAAGTTAGGCATCTAGAGTAATTTCCATCGTAATATAGCAGGAACTA
TTTTGTTTTATAGACTTCTAGGGTTATCAGAAATAGTTAATAACCAAAAAGATTAATATAGTGATATGATCAATACAAATGTTAGACGAACAAGATCATA
CAGAATCAAACTACTGGAGGGCTTTCATAAGGTTGATCTAAAACCGAATTGAAAAATGTAGGACAAGAGGACTATTCTCTTCTGATATTAAATCGAACTC
AAATGTTGAATTGCTCTAAGACTTTTAATGCAAAATGTTTAAAGGCAAACTTAAAAAACAGTTTGAGACGGCAGCATGCATACCTTTGCATGACTGCGAT
TAATTAATGAGTTTCAGCAATGGATCACGGAACATTAATGACTTCCCTCGCATTTCAGGGCCACTCAATTAGAAACGCCACTTAAACAATGATTTTTTTA
ACATTAAAACAAACAAAAGGACATCAAGACCCTTACCCATTTTAACTAAGTAAACAATTCAACCACAAAACACCTCCCTTCTACAGATTCATTGACCAAA
CATGAGACAATACTTATACTAGCTTTCAACTAGATTCTTCAACCACAGCCATTGGGCAAAAATCATATGTAGATGTCAACAAAAAACAAAAACAAAAATT
GCAGGGATTTAAAAAATTAAGAACTGGAACATTTTAATGATCTACAAAGCACATGCACTTATCAAGGATTATGAGTTTCCCGCTGGTTGAAACAGCTACC
TAGCCTGGTTCTTGAAATCAGGGAAATTTCTTTAAATCTACATTCTACAAGAAACCTGAAATAATCATCTTAATAATATGACACTTAAACAATATTCATT
TCCATTGTATAGTTGAGGAAGAAGAACTATGAACCAAGAACTGTTCTTTCATGAAAAGGCAATGAAACAAAGAGAAATATTAGGTGAAAAACACCAATAA
CCGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCTTTGATTTTTTTGTAAAACAAATGTT
CAAA