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Detailed information on CNT30113311


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30499788Ficus caricaCoffea canephora4.3223.7710077reverse complement
CNT30611088Ficus caricaArabis alpina3.9820.9498.5971forward
CNT30342066Ficus caricaEragrostis tef3.8124.1186.7668reverse complement

Expression of CNT30113311

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MCVRSLATKIAGAQLALCQSYDKGCNHILFLFADS*

>peptide 2 (29 aa)
MIGKLSRMNDWKTKLKFVRDSLSSKMQEC*

Sequence

>CNT30113311
CAGAGTGGTACAGTTGTCAAACAGAAATTATGTCTTAAGTAATCATCCGGCTCTTTTTTAGCATTTATTTCCCAGTCTCAAGTTCTGATCTGTTTGTTAA
AGAAGATCAACTTGGGTAACACTTTTTTCTGCAGTACGTCCCAGTGTTATAGTATTATATGATATCAATGTAATGTAACTGGCAGGATTTTGTTTTCTGG
GACCACCGGGGTCACAGCTCGGGTTCAACCATTCTAGTATAAGGTTCTAGCAAATGATAGGATATCACACGGACACTAAGATGGAATAGACCAGCCGATC
AGTATCTCTAGTTTGACTGATACTTACTGTTCTTTAAGTCCATTGTAAAGGGATAGATATACATGAATACGCTTCTTAGTAAACTATAGATCCTCAGTTG
ACGTAGGACCAGATCTTGCTGCCTACATATAAAATCTCATTTAGAAGCTAAAATTAGTTGACTTCCGGATTAACAATACATTAAAACTCACTAGAAACTT
CTTGGGAGTGGTATTACTTAAGAGCAAAGTGATTGCTGTTCTGGAAAGCAGATTCCTTGCAACAGCAAATTGCTTGAAAAAAAAAATTAAAATAGGGGCA
TTCCGAGAATCGAACTCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCAAATGCCCATAATTGGTGTTTATTAAGTTTATCTTGCAATTA
ATATGCCACATTAATGTTAATTGGAGAGCTTTCATTTTTCTGGGACTAACAAGAGTTTTCGTAAGTTAAAGCAGGGGTTGCATAAATTTTAGTGTCTATA
GTTGCTTATCATTTCATATTCATTAAGTCTTTTTAAAATAAAATAAAATGTGTGTGCGCTCATTAGCAACTAAAATTGCAGGTGCTCAGCTGGCTCTGTG
TCAATCGTACGATAAGGGATGTAACCATATATTGTTTCTATTTGCAGATTCCTAACAACAAATTTATTACATTGTCGATGAATAACATAGATCCTTTTGC
TATTTTTTTCATGTTGTTTTTTCTTTTCTAGTGTTTAGCGTCGTCCTTCGTGATCTGTTTGCTTGTGATAGACTTGCTGCCTTTTGTAGAGGAATGGCTT
TAAAAATGTGACCCAAAGAAATCATCAGACTTAAATGCTGTTGTAGAAATGAATGATTGGAAAACTAAGTAGAATGAATGATTGGAAAACTAAGTTGAAG
TTTGTTAGAGATTCCCTGTCTAGCAAAATGCAGGAATGTTGAGCATTCTGAGAATTGAACTTGGGACTTCTCGCACCTAAAGCGAGAATCATACTACTAG
ACCCAATGCCGGTCATTCTGCTCACTGCTAGGCGAGACATCAATATGTTCAATGTTCAAATATTTTGAACTAGGATTTCATTGTTCGGGAATCAATGAGC
TTACACATTACAGGATTTCATTGGTCGGGGAGTAATGAGCTTATACATTACAGGTAATTTCTAGCACGGCTACATGATATCACCGCCTTGAGCTTCCAGA
TTACGGGTAAGTCATAGCACGGCTACATAATATCACCTCCTTGAGCTTACACATTACAGGTGAGTTATAGCACGGCTACATAATACCACCGCCTTGAGCT
TATTTATTATTTTCTATTCATTGAAGTCTTGTTTAAATAGAATATCTGTGAATTCATTACTATCTAGATTTGCAGGTTCTCAGTTGACTAGAGATCAATA
AACTGTAGAAAATATCTATATGAAAATTGTTTTCATTTGCAGATTCCTTACAAGTCAATAAATATTGACGACTTCATGACGGC