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Detailed information on CNT30381399


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30499788Manihot esculentaCoffea canephora6.3822.2210072forward
CNT30403020Manihot esculentaBeta vulgaris6.3826.3710072forward
CNT30611088Manihot esculentaArabis alpina6.2920.9498.5971reverse complement
CNT30653503Manihot esculentaRosa chinensis6.3828.4610072forward
CNT30205405Manihot esculentaHelianthus annuus6.4732.8810073forward
CNT30342066Manihot esculentaEragrostis tef5.5922.3487.363forward

Expression of CNT30381399

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MPITGLIICLCNVTPFPCRNNRRFSPYQLCFSWISHTLV*

>peptide 2 (42 aa)
MPITGLIICLCNITFSLREQSRLLSLSTVLQLDLPHISLRLT*

>peptide 3 (53 aa)
GIWSSGMILALGARGPEFDSRNAPKVFIFVGFCRLIIYEIRLFSNLEQCLSPV*

>peptide 4 (50 aa)
MQNFQSRFYRDLQNLSYLGTALIRILVLLRTGVEEELTIIQGKILQLQES*

Sequence

>CNT30381399
GGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCAAAAGTTTTCATTTTCGTCGGCTTTTGT
CGACTCATTATTTATGAAATCAGACTGTTTTCGAATTTAGAACAATGCCTATCACCGGTTTGATTATTTGCCTCTGCAACATCACCTTTTCCCTGCGGGA
ACAATCGCGGCTTCTCTCCTTATCAACTGTGCTTCAGCTGGATCTCCCACACATTAGTCTAAGATTGACCTAACTGAGAGCTATGCAAAACTAGTTATTC
CTTTTTTTTTTAACCTGGATCAGGAGCTATGAGATTGAAACAAAAAATTTTCAAGTGTTCCTTCCTAATTATATATGTATTTTGATATATTGCAGCTTTG
AAACCAGACTGTTGCGAATTACGAACAATGCCTATCACCGGTTTAATTATTTGCCTCTGCAACGTCACACCTTTTCCCTGCCGGAACAATCGCCGCTTCT
CTCCTTATCAACTGTGCTTCAGCTGGATCTCCCACACATTAGTCTAAGATTGATCTAACTGAGAGCTATGCAAAACTTTCAATCTCGATTTTACAGAGAT
CTTCAGAACTTGTCATATTTGGGGACCGCCTTGATCAGGATCCTTGTGCTTCTAAGAACAGGAGTTGAAGAAGAGTTGACAATAATCCAAGGGAAAATAT
TGCAATTGCAGGAAAGTTGAATCAAGTTTCTATGGACGGCGAAACCATGTGCTATTGTTTCCCAAGTATGCATTACTTGTTGCAATTGCGTTAGGTACTC
AAGGTCAGTTGTGGTGGCGTATGACTTCTTAAACAGGGAAGTGATAGATTTCTAGTCTAGCATTTAGAAAATGCCTGAGACCAATTGGCATTATAATCAT
ACCAGCGTTTGTTTGAGTAGAAAATCGCTCTGAGTCTTGATTCAACGGGTTGGTTGCTTCATTGACTTGGAGCTTAACGGGTGTAAATTATCAAAATCCA
TAATTCACAAAGTCTTACATTTATTTCTGTAGATCTGTGATTTGGTAATTCTTATGTTAATGATTGAGCGGCGAATATTTGAGCATCTCTGGCGGCTTAC
TAATAAGAAGTTAATAGTTAATCAACGG