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Detailed information on CNT3065569


BLAST search results

BLAST vs Swiss-Prot:
sp|Q766C3|NEP1_NEPGR, E-value = 1e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30499788Selaginella moellendorffiiCoffea canephora8.1722.5394.5273forward
CNT30403020Selaginella moellendorffiiBeta vulgaris8.0626.3794.4472forward
CNT30611088Selaginella moellendorffiiArabis alpina7.9520.9492.9671reverse complement
CNT30653503Selaginella moellendorffiiRosa chinensis8.1728.8594.5273forward
CNT30205405Selaginella moellendorffiiHelianthus annuus8.433.7897.3375forward
CNT30342066Selaginella moellendorffiiEragrostis tef7.6124.1186.7668forward

Expression of CNT3065569

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MDVLLLEIPDDRHAIRGKNREAVLGFLRIRLDEIVLLRKIQLGSVLEDDAEGREWHGGPPSGIVANPQDVEGIGPRV*

>peptide 2 (32 aa)
MFCCWKFPMIDMPSVGRIARQCLASCESGWMK*

>peptide 3 (38 aa)
NLCTFLGLKEPSNRCWRIRAAGAGHRRGNGCFAAGNSR*

>peptide 4 (37 aa)
MPLMSSLFGQKKILTFSTVDSLFTLLMGIWSSGMILA*

>peptide 5 (70 aa)
MSKGSALGYEILARNALSTARYASRLSNRESLGRDGEKLLVDLDPLDSKVVEGLHGVVRPHEWRESHLVV*

>peptide 6 (43 aa)
MLCQSNVMLRINHAANVKSLWPKKNSHIFYRGFLIHVANGHLV*

Sequence

>CNT3065569
AATTTATGTACATTTTTAGGGCTCAAAGAGCCGAGCAATCGGTGTTGGCGAATCCGAGCCGCGGGTGCTGGACATCGTAGAGGAAATGGATGTTTTGCTG
CTGGAAATTCCCGATGATCGACATGCCATCCGTGGGAAGAATCGCGAGGCAGTGCTTGGCTTCTTGCGAATCCGGCTGGATGAAATAGTTCTCCTGCGGA
AGATCCAGCTCGGCTCCGTTTTGGAAGACGATGCCGAGGGCAGGGAATGGCACGGCGGTCCTCCCAGTGGCATTGTAGCAAATCCCCAGGATGTCGAAGG
GATCGGCCCTAGGGTATGAGATCCTCGCCAGGAACGCGCTCTCCACCGCTCGCTACGCGTCGCGATTGAGCAATCGCGAATCTCTCGGCCGGGATGGGGA
GAAGCTCCTGGTCGATCTTGATCCCCTGGATTCCAAGGTAGTAGAAGGTCTCCACGGAGTTGTTCGTCCTCACGAATGGCGTGAATCTCATCTGGTGGTG
TAGAGGTTTACAAAGGCGGAAGCGATTCGAGAGTGGACAAGCTTGGCTTGTGAGAGTGTCTTGCACGAGGCGATAAGGCTCAGGCACTCGCGTCTGTCCA
GCCTCGTTTCCAAACTAACCATCAATGCTTTGTCAATCAAATGTGATGTTGAGAATTAATCATGCCGCTAATGTCAAGTCTCTTTGGCCAAAAAAAAATT
CTCACATTTTCTACCGTGGATTCCTTATTCACGTTGCTAATGGGCATTTGGTCTAGTGGTATGATTCTCGCTTAGGGTGCGAGGGGTCCCGAGTTCACTT
CTCGGAATGCCCCCAGTTCTGTGCTTCCATCATAAATCCTAGTGACCCTTGCGGTCCAGGCACAATTCCAGGACCTCCAAATCAGAAATATGC