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Detailed information on CNT30480879


BLAST search results

BLAST vs Swiss-Prot:
sp|P04778|CB1C_ARATH, E-value = 5e-108

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373848Arabidopsis halleriArabidopsis thaliana55.4124.9390.04261forward
CNT30542598Arabidopsis halleriBrassica napus60.332.6892.61284forward
CNT30235032Arabidopsis halleriBrassica oleracea60.333.9392.61284forward
CNT30313780Arabidopsis halleriCamelina sativa57.9624.193.41273forward
CNT3060679Arabidopsis halleriArabidopsis lyrata47.9837.6791.15226forward
CNT30263433Arabidopsis halleriBrassica rapa39.9242.0693.62188forward

Expression of CNT30480879

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHLLWITSSSRFLANVSGSAESPAVSHP*

>peptide 2 (34 aa)
LPTAHFLRLCSLQRLPLRSLVWPKSPKCSERGPS*

>peptide 3 (31 aa)
MGYLMGPLAWQLSSSLSHGRFQGRLMPRGKA*

Sequence

>CNT30480879
CTCCCAACGGCCCATTTCCTGCGACTCTGTAGCCTTCAACGGCTCCCATTAAGATCACTTGTGTGGCCCAAATCGCCAAAATGCTCTGAGCGTGGACCAA
GCTAGGGTTTCCCAAGTAATCGAGCCCTCCATCGCTGAAGATCTGTGAACCAGCCTTGAACCAAACTGCCTCTCCGAATTTGACTCCGGCTCCGAGCATG
GCCCACCTGCTGTGGATAACTTCTAGCTCACGGTTCCTTGCGAATGTCTCGGGGTCGGCTGAGAGTCCGGCGGTGTCCCATCCGTAGTCTCCTGGGAATT
CTCCGGTAAGGTAGCTCGGTGGCTCGCCAGAGAATGGGCCTAAGTACTTGACACGGTCAGATCCGTACCATGGGCTACCTGATGGGCCCTTTGGCTTGGC
AGTTGTCTTCCTCATTGTCACACGGCCGCTTCCAAGGACGTCTGATGCCGCGGGGGAAAGCTTGACGGCCT