Detailed information on CNT30539776


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZ87|CB1B_ARATH, E-value = 4e-110

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30237472Brassica napusBrassica oleracea85.3453.899.29425forward
CNT30263433Brassica napusBrassica rapa76.184.7994.99379forward
CNT30609983Brassica napusGossypium raimondii71.2944.182.82355forward
CNT30354802Brassica napusLactuca sativa72.8942.1685.12363forward
CNT30409978Brassica napusPapaver somniferum60.2431.4582.67300forward
CNT30337333Brassica napusCynara cardunculus74.352.6384.32370forward

Expression of CNT30539776

Peptides detected in this lncRNA

>peptide 1 (56 aa)
WVEQVLGLSQGPVSCNSVTFNGSHQDHLSSPNSQNALSMNQAWVSQVVKSSVAEDL*

>peptide 2 (29 aa)
LGRASPRPLPRARFLQLCNLQRLPSRSLE*

>peptide 3 (29 aa)
MAHLQWITSSSRFLANVSGSAERPAVSHP*

Sequence

>CNT30539776
CTGGGTAGAGCAAGTCCTCGGCCTCTCCCAAGGGCCCGTTTCCTGCAACTCTGTAACCTTCAACGGCTCCCATCAAGATCACTTGAGTAGCCCAAATAGC
CAAAATGCTCTGAGCATGAACCAAGCTTGGGTTTCCCAAGTAGTCAAGTCCTCCGTCGCTGAAGATCTGTGAGCCAGCCTTGAACCAAACCGCCTCTCCG
AACTTGACTCCATTCCTGGCCAGCAACTCCGGGAAGACGCAGCCTAGGGCTCCGAGCATGGCCCACCTGCAGTGGATAACTTCTAGCTCACGGTTCCTTG
CGAATGTCTCGGGATCGGCTGAGAGACCGGCGGTGTCCCACCCATAGTCTCCTGGGAACTCTCCGGTAAGGTAGCTCGGTGGCTCGCTGGAGAATGGACC
CAAGTACTTGACTCTCTCCGCTCCGTACCATGGGCTGCCTGATGGACCCTTCGGCTTGGCGACGGGTCCATCAGGCAGCCCATGGTACGGATCAGAGA