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Detailed information on CNT30337333


BLAST search results

BLAST vs Swiss-Prot:
sp|P27493|CB22_TOBAC, E-value = 2e-139

BLAST vs NONCODE:
NONBNAT005173, E-value = 8e-74

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30539776Cynara cardunculusBrassica napus52.6374.384.32370forward
CNT30237472Cynara cardunculusBrassica oleracea52.6346.8484.86370forward
CNT30263433Cynara cardunculusBrassica rapa45.0970.9284.54317forward
CNT30355191Cynara cardunculusLactuca sativa80.887.9391.2568forward

Expression of CNT30337333

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHLQWMTSSSRFLANVSGSAESPAVSQP*

>peptide 2 (38 aa)
METRPFPESSEPDGATLTACPAKGEERAMLVAAIVELG*

>peptide 3 (94 aa)
LNLQLCKSLWVIGKTQWVEATTRVKWVDNLTKGSTGNSITLNSTHQDDLCSPNGQDALCVNQTWVAQVVKPTLTEDLGSSLEPDCLTELDTISG*

>peptide 4 (31 aa)
MGRSYHQGKVGRQPHQGVHRQFYNPQQHPSR*

Sequence

>CNT30337333
CCTTAACCTTCAGCTCTGCAAAAGCCTCTGGGTCATCGGCAAGACCCAATGGGTCGAAGCTACCACCAGGGTAAAGTGGGTCGACAACCTCACCAAGGGG
TCCACCGGCAATTCTATAACCCTCAACAGCACCCATCAAGATGACTTGTGTAGCCCAAATGGCCAAGATGCTCTGTGCGTGAACCAAACTTGGGTTGCCC
AAGTAGTCAAGCCCACCCTCACTGAAGATCTGGGCTCCAGCCTTGAACCAGACTGCCTCACCGAACTTGACACCATTTCTGGCTAAAAGCTCGGGGAAGA
CACATCCTAGAGCTCCAAGCATGGCCCATCTACAGTGGATGACTTCAAGTTCACGGTTCTTGGCAAATGTTTCGGGGTCTGCAGAAAGTCCGGCGGTGTC
CCAGCCGTAGTCACCTGGGAATTCGCCGGTAAGGTAGCTTGGTGCCTCACCGGAGAATGGGCCCAAGTACTTGACTCGATCTGGGCCGTACCAGGGGCTT
CCAGAGGCGACCTGCTTGGCTGCAGTCTTCCTCATGGAAACCCGTCCATTCCCAGAAAGCTCAGAACCAGATGGAGCTACTTTGACTGCCTGTCCGGCAA
AAGGAGAGGAGAGAGCCATGCTGGTGGCAGCCATTGTTGAGCTTGGATGAAGAGAATTGTTGAAAGTAGGAGACTTGGTTTTAATTATAAAATTGGATTG
ACT