Detailed information on CNT30676548


BLAST search results

BLAST vs Swiss-Prot:
sp|B8ANF1|CHLH_ORYSI, E-value = 9e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30248818Setaria viridisAvena sativa65.9221.7589.12147forward
CNT30575876Setaria viridisOryza barthii65.9223.1584.35147forward

Expression of CNT30676548

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MKRSLKTPEQLTTTSILGRPSSSRLTGST*

>peptide 2 (48 aa)
EEIPEDTRAIDDDVNPWTSKLLKADRLNIASLKGKLQAAQLIVLHNEF*

Sequence

>CNT30676548
ATGAAGAGATCCCTGAAGACACCCGAGCAATTGACGACGACGTCAATCCTTGGACGTCCAAGCTCCTCAAGGCTGACAGGCTCAACATAGCTTCCCTCAA
GGGCAAGCTTCAAGCTGCCCAGCTCATTGTCTTGCACAATGAGTTTTAAGCACTCCCCCAAGAATCCAAATAAGACCCTCAGCTTCTCTCTGTCTGCCCT
GATGAACTTGGTCGTGGACAAGT