CANTATAdb - search

Detailed information on CNT3075899

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 1e-127

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30375706	Brassica juncea	Arabidopsis thaliana	45.01	45.78	87.78	401	forward
CNT30540963	Brassica juncea	Brassica napus	73.74	99.55	98.93	657	forward
CNT30237247	Brassica juncea	Brassica oleracea	21.55	68.82	96.35	192	forward
CNT30311374	Brassica juncea	Camelina sativa	28.4	76.44	85.77	253	forward
CNT30479038	Brassica juncea	Arabidopsis halleri	25.14	37.65	90.18	224	forward

Expression of CNT3075899

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MSYQFLERSKKVNHLSSLHVSSATDKTQQAQELCELYSRFPLLFQVLQEEAVAAEV*

>peptide 2 (44 aa)
TAKRNVDRFSISPIILLLASDELPVPGEIKEGEPSFFASRFISD*

>peptide 3 (46 aa)
MLDMLLPLNRKLMPIFIRRILLVQNIINRLRHHLKRRRNVIQRLTR*

Sequence

>CNT3075899
ACTGCTAAGAGGAACGTTGATCGGTTCTCGATCTCCCCAATCATATTGCTCCTAGCTTCAGATGAGCTACCAGTTCCTGGAGAGATCAAAGAAGGTGAAC
CATCTTTCTTCGCTTCACGTTTCATCAGCGACTGATAAAACTCAACAAGCTCAGGAGCTCTGTGAACTTTACTCCCGCTTCCCGCTCCTCTTCCAAGTGC
TCCAGGAGGAGGCGGTGGCGGCGGAGGTCTAGGGGAAGGCACATTAGTGCTCTTACCACCTCCAGCTGATCTTGGAGGCGGGCGAGGCACTCTAGGAGGT
CGTTTCTCAATATCCACAAGCTTCATTTTCGCCACGGCTTGCGCGTTTTCGCTAGCTTTACCATCGTTGTTGCCGTCACTAGACTGATCACTTGCGGTAA
CCGTCCTGGTCAAGGAGGGAACCGAAACTGGCTTCTCCTTGAGCTGAGCAAGTTTAGGAGGCAAAGCCACATTACCTCCAAACCTCTCAGCTCTCGCTTG
ATCTGCCTTATGCTTGATATGCTTCTCCCTCTCAACCGCAAGCTTATGCCTATCTTTATACGCAGGATACTTCTCGTCCAGAACATTATCAACCGACTTA
GACATCACCTGAAACGACGCCGCAACGTTATTCAAAGGCTCACCCGGTGAAGAAGCTTGTTGCTGTGTTCTGATTCTCGGCAGATTCGGAGTCTCAGGTG
TACCAGGACTTTCTTGATCCACTTTACCAAAAGTCGTTATAGCTACTGATTCACCAGCGTTTCTAATCATCAGAGACTCCAAAGGACCTCTCTGTTTATT
CATACTCACGCTAAGTCTCCCAGGTGATCCTCCATAGAACGATCTCGAAGGAGAGGACTGAACGCTTGAATCATCTTTACTTTTACCGCCC