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Detailed information on CNT30375854


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 4e-42

BLAST vs NONCODE:
NONBRAT003540, E-value = 3e-69

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30237247Arabidopsis thalianaBrassica oleracea42.6563.4489.83177forward

Expression of CNT30375854

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MIDKTQQAQELGELCSRLPLLFQVLQEEVVEEAVHRQVVEEVVVDHHQVKEVLLKAS*

>peptide 2 (44 aa)
TAKRNVDRFSISPIILFLAAEELPVPEEIKEGAPSFFDSRFIND*

Sequence

>CNT30375854
TACTGCTAAGAGGAATGTTGATCGGTTCTCGATTTCCCCAATCATATTGTTCCTAGCTGCTGAAGAATTACCAGTTCCTGAAGAGATCAAAGAAGGTGCA
CCTTCTTTCTTCGATTCACGTTTCATCAATGATTGATAAAACTCAACAAGCTCAGGAGCTCGGTGAACTTTGTTCCCGCCTCCCGCTCCTCTTCCAAGTG
CTCCAGGAGGAGGTGGTGGAGGAGGCGGTCCACCGCCAGGTGGTGGAGGAGGTGGTGGTGGACCACCACCAGGTAAAGGAGGTCTTGCTGAAGGCAAGTT
AGTACTTTTACCACCTCCAGCTGATCTTGGAGGCGGGCGAGGTACTCTAGGAGGTCGTTTCTCAATGTCTACAAGCTTCATTTTGGTTACGGTTGCAGCG
TTTTCGCTGGCTTTA