CANTATAdb - search

Detailed information on CNT30538893

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 2e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30237247	Brassica napus	Brassica oleracea	46.37	98.57	96.73	275	forward

Expression of CNT30538893

Peptides detected in this lncRNA

>peptide 1 (43 aa)
AKRNVDRFSISPIILLLASDELPVPGEIREGEPSFFASRFIND*

>peptide 2 (83 aa)
LLRGTLIDSLFHQSYCSSLQMSYQFLERSEKVNHLSSLHVSSTTDKTQQAQELCELCSRFPLLFQVLQEEEGEVVDHHQAKEV*

Sequence

>CNT30538893
CTGCTAAGAGGAACGTTGATCGATTCTCTATTTCACCAATCATATTGCTCCTCGCTTCAGATGAGCTACCAGTTCCTGGAGAGATCAGAGAAGGTGAACC
ATCTTTCTTCGCTTCACGTTTCATCAACGACTGATAAAACTCAACAAGCTCAGGAGCTCTGTGAACTTTGCTCCCGCTTCCCGCTCCTCTTCCAAGTGCT
CCAGGAGGAGGAGGGGGAGGTGGTGGACCACCACCAGGCAAAGGAGGTCTAGGGGAAGGCACATTAGTACTTTTACCACCTCCAGCTGATCTAGGAGGCG
GGCGAGGCACCCTAGGAGGACGTTTCTCAATATCCACAAGCTTCATTTTCGCCACGGCTTGCGCGTTTTCGCTGGCTTTACCATCGTTGCCGTCGCTAGA
CTGATCACTTGCGGTAACCGTCCTGGTCAAGGAGGGAACTGAAACTGGTTTCTCCTTGAGCTGAGCTAGTTTAGGAGGCAAAGCCACATTGCCTCCAAAC
CTCTCAGCCCTCGCTTGATCTGCTTTATGCTTAATATGCTTCTCCCTCTCAACCGCAAGCTTATGCCTATCTTTATACGCAGGATACTTCTCG