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Detailed information on CNT3061202


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 1e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375313Arabidopsis lyrataArabidopsis thaliana10039.4594.27314forward
CNT30538913Arabidopsis lyrataBrassica napus90.1345.2887.63283forward
CNT30237247Arabidopsis lyrataBrassica oleracea48.0954.1292.05151forward
CNT30311374Arabidopsis lyrataCamelina sativa33.7632.0294.34106forward
CNT3075855Arabidopsis lyrataBrassica juncea92.9931.785.27292forward
CNT30612723Arabidopsis lyrataArabis alpina96.1816.588.74302forward
CNT30479034Arabidopsis lyrataArabidopsis halleri102.8760.1595.36323forward
CNT30328602Arabidopsis lyrataAsparagus officinalis20.0615.9985.7163forward
CNT30114813Arabidopsis lyrataEutrema salsugineum56.0521.2692.61176forward

Expression of CNT3061202

Peptides detected in this lncRNA

>peptide 1 (85 aa)
LMNYQFLKRSKKVHLLSSIHVSSMIDKTQQAQELGELCCRLPLLFQVLQEAVVVAAAHHQVREVLLKAKWYFYQLQMILEVGEVL*

Sequence

>CNT3061202
CTGATGAATTACCAGTTCCTGAAGAGATCAAAGAAGGTGCACCTTCTTTCTTCGATTCACGTTTCATCAATGATTGATAAAACTCAACAAGCTCAGGAGC
TCGGTGAACTTTGTTGCCGCCTCCCGCTCCTCTTCCAAGTGCTCCAGGAGGCGGTGGTGGTGGCGGCGGCCCACCACCAGGTAAGGGAGGTCTTGCTGAA
GGCAAAGTGGTATTTTTACCAGCTCCAGATGATCTTGGAGGTGGGCGAGGTACTCTAGGAGGTCGTTTCTCAATGTCTACAAGCTTCATTTTGGTTACGG
TTGCAGCGTTTTCG