CANTATAdb - search

Detailed information on CNT30612723

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30375706	Arabis alpina	Arabidopsis thaliana	48.52	101.37	87.73	888	forward
CNT30540970	Arabis alpina	Brassica napus	37.32	99.42	83.02	683	forward
CNT30237247	Arabis alpina	Brassica oleracea	10.82	70.97	88.89	198	forward
CNT30309942	Arabis alpina	Camelina sativa	26.07	99.38	92.66	477	forward
CNT3061202	Arabis alpina	Arabidopsis lyrata	16.5	96.18	88.74	302	forward
CNT3075855	Arabis alpina	Brassica juncea	50.77	100.87	83.85	929	forward
CNT30479034	Arabis alpina	Arabidopsis halleri	29.84	101.68	85.35	546	forward
CNT30569875	Arabis alpina	Vitis vinifera	10.22	22.75	79.68	187	forward

Expression of CNT30612723

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MNYQFLLKRSMKVHHLSSLHVSSMIDKTQLAQELGELCSHFPVLLFPVLQEAVVVDHHQVKEVLVKGYWYFYHQLILEADGVL*

>peptide 2 (33 aa)
MTKKESSSSSQLTNAKRSSMLVKEEARTSVAND*

>peptide 3 (32 aa)
MATDSPAFLIIKDSKGPLSFFMLVLSLPGDPP*

>peptide 4 (31 aa)
SNLYIFLKAGSQGRLGSSTKEVTCFSSFMRS*

Sequence

>CNT30612723
TAGCAACTTGTACATTTTCCTTAAAGCAGGTTCACAAGGAAGATTAGGATCGTCGACAAAGGAAGTCACTTGCTTCTCCAGTTTCATGAGATCTTGATAT
TCAAAAGCTGCTTCTCGTAACGCATCAGCTTTACCTTCTGGCCAGTCAAAGTGTTTAAGAACTGCCCTTTCATCGACCTACATAACAAAAGACAGTAATT
GGTTTGTGAGTAACAAAGAACCGAAATAGCGGTTAGAAGCTAATGGTGAAAAGAGGAGTTAATGACCAAGAAAGAGAGCTCTTCATCTAGCCAGCTAACA
AACGCCAAAAGATCTTCTATGTTGGTGAAGGAAGAAGCTCGAACTTCGGTTGCTAACGACTGAACAAAGTCGCCTTGTGTCTCCACATCCGCTTTCACCT
GTAGTGATCATTTCATATAAATTCAGAGTGCATCAACATAGTAACGAGTCTATTGAGTCAAAGTGAGAACTTACTGCTAAGAGGAATGTTGATCGGTTCT
CGATTTCTCCAATCATATTGCTCCTAGCTTCAGATGAATTACCAGTTCCTCCTGAAGAGATCAATGAAGGTGCACCATCTTTCTTCGCTTCACGTTTCAT
CAATGATTGATAAAACTCAACTAGCTCAGGAGCTCGGTGAACTTTGTTCCCACTTCCCGGTCCTCCTCTTCCCAGTGCTCCAGGAGGCGGTGGTGGTGGA
CCACCACCAGGTAAAGGAGGTCTTGGTGAAGGGATATTGGTACTTTTACCACCAGCTGATCTTGGAGGCGGACGGGGTACTCTAGGAGGTCGTTTCTCAA
TGTCTACAAGCTTCATTTTGGTTACAGCTTGAGCGTTTTCGCTGGCTTTAACATCGTTTTCGCTGGCTTCATTAGACTGATCATTTGTTTTCACTGAGCG
AACCGTGGGAACCAAAACCGATTTCTCCTTCAGTTGAGCAAGTTTAGGAGGTAAAGCCACATTACCGCCAAATCTCTCTGCTCTCGCTTGATCTGCTTTA
TGCTTAATGTGCTTCTCTCTCTCAACTGCTAACTTATGACGGTCTTTATACGCAGGATACTTCTCATCCAAAACACCATCAACCGATTTAGACATCACAT
GGAATGATGCTGCAACGGAATTCAAAGGCTCACCACCCGGAGAAGAAGCTTCTTGTTGTGTTCTGATTCTTGGAAGATTCGGAGTTTCAGGGGTACTAGG
ACTTTCTTGATCCACTTTACCAAATGTTGTTATGGCTACGGATTCACCTGCATTTCTAATCATCAAAGATTCTAAAGGACCTCTCTCTTTTTTCATGCTC
GTGCTAAGTCTTCCTGGTGATCCTCCATAGAATGATCTTGAAGGCGAGGACTGAACACTCGAATCATCTTTACTTTTACCCCATTTTTTAAGCTTCTGGA
TCAATCCTGGCTTTTTGCTAATACTACTAAACCTACTTGTGGAACTATCCATTGAAGCATTATCGAAATCATCGCTTCCCGGAGATGAAGGTTGAGAGAA
GTTGCTCTCTACATCAGTATCTCCTTGGCCACGTTCTGAACCAGCATACTCTAGCATCAACCTTTTAGCTTTAGCTTGGGATTTGGGACTTAGATTCTTG
CTTAAGTCACGAGCCGAGGTTTTACCAGCTGGTGTCTGGTAATTTCTTAACTCATACCGTAAACACGCATTGACCCAACGGAGATAAACCAATTCCTCAA
CTTCACTAAACCTATTCATCTGAAGCCCTTCCACTTGCTTTAACAAATCCTCATTGTTATGCTTCAGATTGTTCACCTCTTCTCTTACTTTCGCCACTTT
ATCGCTCTATGGAAAGCAAAGGCAAGAAAC