Detailed information on CNT30479038


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 4e-80

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375706Arabidopsis halleriArabidopsis thaliana53.2836.1996.85317forward
CNT30237247Arabidopsis halleriBrassica oleracea29.7563.4489.83177forward
CNT30311374Arabidopsis halleriCamelina sativa39.6671.387.29236forward
CNT3075899Arabidopsis halleriBrassica juncea34.1222.7890.64203forward
CNT30114813Arabidopsis halleriEutrema salsugineum50.7636.4785.1302forward

Expression of CNT30479038

Peptides detected in this lncRNA

>peptide 1 (44 aa)
TAKRNVDRFSISPIILFLAADELPVPEEIKEGAPSFFDSRFIND*

>peptide 2 (95 aa)
MNYQFLKRSKKVHLLSSIHVSSMIDKTQQAQELGELCCRLPLLFQVLQEAVVVAAAHHQVVEEVVVDLHQVREVLLKAKWYFYQLQMILEAGEVL*

Sequence

>CNT30479038
TTACTGCTAAGAGGAATGTTGATCGGTTCTCGATTTCCCCAATCATATTGTTCCTAGCTGCTGATGAATTACCAGTTCCTGAAGAGATCAAAGAAGGTGC
ACCTTCTTTCTTCGATTCACGTTTCATCAATGATTGATAAAACTCAACAAGCTCAGGAGCTCGGTGAACTTTGTTGCCGCCTCCCGCTCCTCTTCCAAGT
GCTCCAGGAGGCGGTGGTGGTGGCGGCGGCCCACCACCAGGTGGTGGAGGAGGTGGTGGTGGACCTCCACCAGGTAAGGGAGGTCTTGCTGAAGGCAAAG
TGGTACTTTTACCAGCTCCAGATGATCTTGGAGGCGGGCGAGGTACTCTAGGAGGTCGTTTCTCAATGTCTACAAGCTTCATTTTGGTTACGGTTGCAGC
GTTTTCGTTGGCTTTACCTTCGTTAGACTCATTTGACTCGTTAGACTGATCACCTGTGGCTGTGATCACGGAGGGAACCACAACCCTTTTCTCCTTTAGT
TGAGCAAGTTTAGGAGGCAAAGCCACATTACCGCCAAATCTCTCTGCTCTCGCTTGATCTGCTTTATGCTTAATGTGCTTCTCTCTTTCAACTGC