Detailed information on CNT30311374


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 3e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374749Camelina sativaArabidopsis thaliana102.7260.2888.53340forward
CNT30540963Camelina sativaBrassica napus76.4438.3385.77253forward
CNT30237247Camelina sativaBrassica oleracea32.9339.0791.74109forward
CNT3061202Camelina sativaArabidopsis lyrata32.0233.7694.34106forward
CNT3075899Camelina sativaBrassica juncea76.4428.485.77253forward
CNT30479038Camelina sativaArabidopsis halleri71.339.6687.29236forward
CNT30114813Camelina sativaEutrema salsugineum29.6111.8490.8298forward

Expression of CNT30311374

Peptides detected in this lncRNA

>peptide 1 (58 aa)
HVSSTIDKTQQAQELDELCYLLLLLFQVLQEAVVVEVLQKVNCYFYHLQLILVAGEVL*

>peptide 2 (40 aa)
TFHQRLIKLNKLRSSMNFATSSCSSSKCSRRRWWWRSCRR*

Sequence

>CNT30311374
CACGTTTCATCAACGATTGATAAAACTCAACAAGCTCAGGAGCTCGATGAACTTTGCTACCTCCTCCTGCTCCTCTTCCAAGTGCTCCAGGAGGCGGTGG
TGGTGGAGGTCTTGCAGAAGGTAAATTGCTACTTTTACCATCTCCAGTTGATCTTGGTGGCGGGCGAGGTACTCTAGGAGGTCGTTTCTCAATGTCTACA
AGCTTCATTTTGGCTACGGCTTGAGCGTTTTCACTGGCTTTGCCTTCGTTAGACTGATCATTAGACTGATCACCTGTGATCATCACTGAGGGAACCACAA
CTTTTTTCTCCTTTAGTTGAGCAAGTTTAGG