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Detailed information on CNT30114813


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 5e-119

BLAST vs NONCODE:
NONBRAT003540, E-value = 2e-121

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375859Eutrema salsugineumArabidopsis thaliana100.8592.4785.63835forward
CNT30540970Eutrema salsugineumBrassica napus8298.8482.92679forward
CNT30237247Eutrema salsugineumBrassica oleracea23.0768.4690.58191forward
CNT30311374Eutrema salsugineumCamelina sativa11.8429.6190.8298forward
CNT3061202Eutrema salsugineumArabidopsis lyrata21.2656.0592.61176forward
CNT3076005Eutrema salsugineumBrassica juncea100.1289.7284.32829forward
CNT30612626Eutrema salsugineumArabis alpina100.4845.2487.62832forward
CNT30479038Eutrema salsugineumArabidopsis halleri6894.6284.55563forward

Expression of CNT30114813

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MNYQFLKRSKKVHRLSSLHVSSMTDKTQLTQELGELCSRFHLLFQVHQEEAVVAVAHHLEAAEAHHQAEEEVLRKAHW*

>peptide 2 (37 aa)
RFSISPIILLLASDELPVPEEIKEGAPSFFASRFIND*

>peptide 3 (91 aa)
MLNVLLSLNRQLMPVFVRWILLIQNVINGFRHHLKRRCNGIQRLTGRRRSLLLCPDSWKIRSFRGTWTFLIHFTKRCYGYGFSCVSYHQRL*

>peptide 4 (31 aa)
MCFSLSTASLCLSLYAGYFSSKTLSTDLDIT*

Sequence

>CNT30114813
ATCGATTTTCGATTTCTCCAATCATACTGCTCCTAGCTTCAGATGAATTACCAGTTCCTGAAGAGATCAAAGAAGGTGCACCGTCTTTCTTCGCTTCACG
TTTCATCAATGACTGATAAAACTCAACTAACTCAGGAGCTCGGTGAACTTTGTTCCCGCTTCCACCTCCTCTTCCAAGTGCACCAGGAGGAGGCGGTGGT
GGCGGTGGCCCACCACCTGGAGGCCGCGGAGGCCCACCACCAGGCGGAGGAGGAGGTTTTGAGGAAGGCACATTGGTAGTTTTACCACCAGATGATCTTG
GAGGCGGTCGTGGAACTCTAGGAGGTCGTTTCTCAATGTCCACAAGCTTCATTTTGGTCACGGCTTGAGCGTTTTCGCTGGCTTTAGTTTCGTTACCATT
ACCATCGTTAGACTGATCACTTGTGGTCACTCTCACTGAAGGAACCAAAACTGATTTCTCCTTCAATTGAGCAAGCTTGGGAGGCAAAGCCACATTACCT
CCAAATCTCTCTGCTCTCGCTTGATCAGCTTTATGCTTAATGTGCTTCTCTCTCTCAACCGCCAGCTTATGCCTGTCTTTGTACGCTGGATACTTCTCAT
CCAAAACGTTATCAACGGATTTAGACATCACTTGAAACGACGCTGCAACGGAATTCAAAGGCTCACCGGGAGAAGAAGAAGCTTGTTGTTGTGTCCTGAT
TCTTGGAAGATTCGGAGTTTCAGGGGTACTTGGACTTTCTTGATCCACTTTACCAAACGTTGTTATGGCTACGGATTCTCCTGCGTTTCTTATCATCAGA
GACTCTAAAGGACCTCTCTGTTTATTCA