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Detailed information on CNT30551403


BLAST search results

BLAST vs Swiss-Prot:
sp|B8ANF1|CHLH_ORYSI, E-value = 2e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676168Oryza brachyanthaSetaria viridis27.2619.7991.56154forward
CNT30524159Oryza brachyanthaSetaria italica49.9131.4491.84282forward
CNT30378440Oryza brachyanthaArabidopsis thaliana13.125.4385.1474forward
CNT30382125Oryza brachyanthaManihot esculenta18.2327.0385.44103forward
CNT3084502Oryza brachyanthaVigna radiata39.1219.0881.45221forward
CNT30173073Oryza brachyanthaTrifolium pratense27.7933.6982.17157forward
CNT30248696Oryza brachyanthaAvena sativa49.7320.1190.39281forward
CNT3017375Oryza brachyanthaZea mays49.7331.9783.27281forward
CNT30681154Oryza brachyanthaTriticum urartu49.0336.591.7277forward
CNT30571520Oryza brachyanthaVitis vinifera51.1550.6180.97289forward
CNT30147901Oryza brachyanthaBrachypodium distachyon14.5129.2987.882forward
CNT30116351Oryza brachyanthaOryza nivara47.9630.4292.25271forward

Expression of CNT30551403

Peptides detected in this lncRNA

>peptide 1 (35 aa)
VKYSKERTSTHAPFSFTTTLVVTLYPHVCHVTTSL*

>peptide 2 (40 aa)
MPAPGASLSNAKDLRLRYMSWSCFSSVHDAFSTAKFTFDE*

>peptide 3 (56 aa)
EIFQRKNFYSCSIFIHNHPRCNTVSSCMSCYNFFINYTNCTSLNSQFSETEGFLLG*

>peptide 4 (96 aa)
MSPSSGMWHLLLLEQAQTPCVSLSCLPLEHHCQMQKTYDSGTCPGAASHQSMMHSPLPNSHSMSKSLMHLRTPLLLPLLLKHQVPVPAPVHACARSS

>peptide 5 (33 aa)
MQDLFDQISLPVNSFDLVFNLRVEFPELFQVFL*

Sequence

>CNT30551403
GTGAAATATTCCAAAGAAAGAACTTCTACTCATGCTCCATTTTCATTCACAACCACCCTCGTTGTAACACTGTATCCTCATGTATGTCATGTTACAACTT
CTTTATAAATTACACAAATTGTACAAGTCTCAACTCTCAATTCAGTGAGACAGAAGGATTTCTCCTTGGTTGAATGCAGGATCTGTTTGATCAAATAAGT
TTACCGGTCAATTCCTTCGATCTTGTCTTCAACCTCAGAGTAGAGTTCCCTGAGCTTTTCCAAGTTTTCCTCTGATGTCTCCCAGTTCTGGAATGTGGCA
TCTGCTGTTGCTAGAGCAAGCTCAAACGCCTTGCGTTTCTCTTTCATGCCTGCCCCTGGAGCATCACTGTCAAATGCAAAAGACTTACGACTCAGGTACA
TGTCCTGGAGCTGCTTCTCATCAGTCCATGATGCATTCTCCACTGCCAAATTCACATTCGATGAGTAAGAGCCTGATGCATTTGAGAACACCCTTGTTGC
TGCCTCTCTTACTGAAACACCAAGTTCCTGTGCCTGCTCCTGTGCATGCTTGCGCACGTAGTTCA