Detailed information on CNT30523916


BLAST search results

BLAST vs Swiss-Prot:
sp|B8ANF1|CHLH_ORYSI, E-value = 5e-130

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676230Setaria italicaSetaria viridis72.171.1397.04473forward
CNT30378440Setaria italicaArabidopsis thaliana11.2825.4386.4974forward
CNT30727458Setaria italicaCorchorus capsularis20.4320.7880.6134forward
CNT30382125Setaria italicaManihot esculenta23.1739.982.24152forward
CNT3084502Setaria italicaVigna radiata20.2711.4982.71133forward
CNT30538066Setaria italicaBrassica napus24.5429.9881.37161forward
CNT30173073Setaria italicaTrifolium pratense19.0526.8281.6125forward
CNT30260882Setaria italicaBrassica rapa24.5424.7782.61161forward
CNT3017375Setaria italicaZea mays47.7135.6187.54313forward
CNT30571520Setaria italicaVitis vinifera22.125.3982.76145forward

Expression of CNT30523916

Peptides detected in this lncRNA

>peptide 1 (98 aa)
MPCASPSCLPLERHCRMQRTCGSGTCPGAASHRSMMHSPLPNSHLTSRTLMHLRTPLLLPLLVGHPAPLPAPGHACAHSSSLLAHLVQRPSSLRGPTGS

>peptide 2 (40 aa)
MPAPGASLSNAKDLRLRYMSWSCFSSVHDAFSTAKFTFDE*

Sequence

>CNT30523916
CTCCCAATAGCCTCTGCCGCTGGCTTCTAGGAAGGTCTGGACCAGCTTCCTGAATGAGTTGGGGTTGGTCTCCATGAGCCTCTTCCTCATCGCCTCATCT
TCAATGAATGTGGAATTTGCCTCCTCATAAACCCAGTTGTCAACTTGTCCGGATGTTGCACTCCACCCAACAGTGTTTGTGAGCCGCTTCTCGATCTCTC
TAACTCCCTCATAGCCGCTCTTCATCATCCCCTCATACCACTTTGGGTTCAGTAGCTTTGTCCTTGCATCAAGACGCACCGTCTCCGACAGTGTTCTCAC
CTGTGCATTTGCTGTGGTTGTATCTGCTATGTAAGAGGCAGTTGCCAGAGCAAGCTCAAATGCCTTGCGCTTCTCCTTCATGCCTGCCCCTGGAGCGTCA
CTGTCGAATGCAAAGGACTTGCGGCTCAGGTACATGTCCTGGAGCTGCTTCTCATCGGTCCATGATGCATTCTCCACTGCCAAATTCACATTTGACGAGT
AGGACCCTGATGCATTTGAGAACACCCTTGTTGCTGCCTCTCTTAGTGGGACACCCAGCTCCTCTGCCTGCTCCTGGGCATGCTTGCGCACATAGTTCAT
CTCTACTGGCTCATCTAGTTCAGCGACCATCTTCACTGCGCGGTCCAACAGGTTCA