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Detailed information on CNT30681154


BLAST search results

BLAST vs Swiss-Prot:
sp|B8ANF1|CHLH_ORYSI, E-value = 1e-129

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30548454Triticum urartuIpomoea triloba7.9125.9788.3360forward
CNT30514102Triticum urartuJuglans regia26.4822.5381.59201forward
CNT30378440Triticum urartuArabidopsis thaliana9.7525.4387.8474forward
CNT30382125Triticum urartuManihot esculenta14.6229.1381.98111forward
CNT30179310Triticum urartuSecale cereale22.5352.9498.25171forward
CNT30173073Triticum urartuTrifolium pratense16.4726.8282.4125forward
CNT3017375Triticum urartuZea mays43.8737.8884.08333forward
CNT30571440Triticum urartuVitis vinifera34.1260.3779.54259forward
CNT30147901Triticum urartuBrachypodium distachyon19.8953.9385.43151forward
CNT30551403Triticum urartuOryza brachyantha36.549.0391.7277forward
CNT30726206Triticum urartuLupinus angustifolius26.7519.8280.3203forward
CNT3064891Triticum urartuSelaginella moellendorffii10.1423.484.4277forward

Expression of CNT30681154

Peptides detected in this lncRNA

>peptide 1 (97 aa)
MWHLLLLEQAQTSCVSLACLPLEHHCRMQKICGSGTCPGAASHLSMMHSPLLSSHSTNKSLMHLRRSLLPPLLPRHRAPLPAPGHACAHSSSQLAHLV

>peptide 2 (40 aa)
MPTPGASLSNAKDLRLRYMSWSCFSSVHDAFSTAKFTFDE*

>peptide 3 (31 aa)
MWCLLPRKPSCPPARMLHSIQQYSSAASRSL*

Sequence

>CNT30681154
GTTCACCGGTCAATTCCTTCGATCTTGTCTTCAACCTCCGAGTAGAGCTCCCTGAGCCTTTCCAAGTTATCCTCTGATGTCTCCCAGTAGCCTCTGCCAT
TTGCTTCTAGGAAGGTTTGAAGCAGCTTCCTGAACGAATTGGGATTTGTGTCCATCAGCCTCTTCCTCATCTCTTCATCTTCGATGAATGTGGTGTTTGC
TTCCTCGTAAACCCAGTTGTCCACCTGCCCGGATGTTGCACTCCATCCAACAGTATTCGTCAGCCGCTTCTCGATCTCTCTAACTCCCTCATAGCCACTC
TTCATCATCCCCTCGTACCACCTAGGGTTCAGTAGCTTTGTCCTTGCATCAAGACGCACCGTGCCCGCCCATCCTTCCGCAGCCCTTGCACCAGCTTCGT
CGGGTCTGAGTCGAAGTAGTGGCTGACATCTGTCAGTGAGATCTCCGAGGAGTCCAGGTTTTGGAATGTGGCATCTGCTGTTGCTAGAGCAAGCTCAAAC
GTCTTGCGTTTCTCTAGCATGCCTACCCCTGGAGCATCACTGTCGAATGCAAAAGATTTGCGGCTCAGGTACATGTCCTGGAGCTGCTTCTCATCTGTCC
ATGATGCATTCTCCACTGCTAAGTTCACATTCGACGAATAAGAGCCTGATGCATTTGAGAAGATCCTTGTTGCCGCCTCTCTTACCGAGACACCGAGCTC
CTCTGCCTGCTCCTGGGCATGCTTGCGCACATAGTTCATCTCAATTGGCTCATCTAGTT