« Back to Saccharum spontaneum search


Detailed information on CNT30464311


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SUT0|RDL4_ARATH, E-value = 9e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553550Saccharum spontaneumOryza glaberrima46.9298.7487.29236forward
CNT303678Saccharum spontaneumZea mays28.039.997.16141forward
CNT30116501Saccharum spontaneumOryza nivara27.8334.2387.86140forward

Expression of CNT30464311

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MIDMSAAAASDTSSSSSAAAAASDVVEAPISAALQEGELAS*

>peptide 2 (47 aa)
PQLPWSLTSATAPLVLQSTDSGSSTLSSAWYLALSFLSLCGLVLTPR*

>peptide 3 (70 aa)
AAALVLDLRDGALGSPINGLRQLHVVVGVVPGAELPLPLRLGPDAEVGGGRSGRPRRRRRCARRCSGGCP*

Sequence

>CNT30464311
CCGCAGCTGCCCTGGTCCTTGACCTCCGCGACGGCGCCCTTGGTTCTCCAATCAACGGACTCCGGCAGCTCCACGTTGTCGTCGGCGTGGTACCTGGCGC
TGAGCTTCCTCTCCCTCTGCGGCTTGGTCCTGACGCCGAGGTAGGTGGCGGAAGGAGTGGACGCCCGCGTCGGCGGCGGCGTTGTGCTCGTCGATGTAGC
GGAGGTTGTCCCTGAACACCTGGTACCGCCTCTCCTCCTCGCCGATGGCGTTGTAGGTCCGGCCGTGCGCCGCCATCCACTCCGCGTACATCCGCCGCGT
CTCCTCCTCGCTCCGCTCCCCGTAGGAGATGATCGACATGTCCGCCGCCGCGGCGAGCGACACGAGCAGCAGCAGCAGCGCCGCCGCCGCCGCCAGCGAC
GTAGTGGAGGCGCCCATCTCCGCCGCGCTACAGGAAGGCGAGCTAGCTAGCTAGGAAGAGGAGGGAGCAGATGGATGGATGAGAGGATGACAGGAGGCTG
GAG