Detailed information on CNT30221493


BLAST search results

BLAST vs Swiss-Prot:
sp|P25776|ORYA_ORYSJ, E-value = 2e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30465257Hordeum vulgareSaccharum spontaneum99.626.8587.45247forward
CNT303678Hordeum vulgareZea mays31.855.5587.3479forward
CNT30365871Hordeum vulgareSorghum bicolor44.3533.3384.55110forward
CNT30585090Hordeum vulgareEchinochloa crusgalli49.67.1986.99123forward
CNT30498134Hordeum vulgareDigitaria exilis32.6620.5688.8981forward
CNT30116501Hordeum vulgareOryza nivara48.7929.5885.95121forward
CNT30558531Hordeum vulgarePanicum hallii45.9745.7886.84114forward

Expression of CNT30221493

Peptides detected in this lncRNA

>peptide 1 (81 aa)
LGQLVVVGGLVPGAELPLPVGLSAGAEVGAAVLLVGEVGEAVVPERLEAALLLADGVVRTAVLRHPLGVHPPDLLLAPLPVG

Sequence

>CNT30221493
ACTCGGGCAGCTCGTCGTTGTCGGCGGCCTGGTACCTGGCGCTGAGCTTCCGCTCCCGGTCGGGCTTAGTGCGGGCGCCGAGGTAGGTGCTGCGGTACTC
CTCGTTGGTGAGGTCGGCGAAGCGGTTGTCCCGGAACGCCTCGAAGCGGCGCTCCTCCTCGCCGATGGCGTTGTACGTACTGCCGTGCTCCGCCATCCAC
TCGGCGTACATCCGCCGGACCTCCTCCTCGCTCCGCTCCCCGTAGGAC