Detailed information on CNT30365871


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30221493Sorghum bicolorHordeum vulgare33.3344.3584.55110forward
CNT30464465Sorghum bicolorSaccharum spontaneum58.4847.7797.41193forward
CNT30585090Sorghum bicolorEchinochloa crusgalli33.646.4992.79111forward
CNT30116501Sorghum bicolorOryza nivara2016.1490.9166forward

Expression of CNT30365871

Peptides detected in this lncRNA

>peptide 1 (58 aa)
RQVLVIVGVVPGAELPLPLRLGPDAEVGGAVLFVGEVRPCVAIHSAYIRRVSSSLRSP*

>peptide 2 (38 aa)
MIDMSAAAASDTSSSSAAAAAASDVVVEAPISDALQEG*

Sequence

>CNT30365871
CGGCAGGTCCTCGTTATCGTCGGCGTGGTACCTGGCGCTGAGCTTCCTCTCCCTCTGCGGCTTGGTCCTGACGCCGAGGTAGGTGGCGCGGTACTCTTCG
TTGGTGAGGTCCGGCCGTGCGTCGCCATCCACTCCGCGTACATCCGCCGCGTCTCCTCCTCGCTCCGCTCCCCGTAGGAGATGATCGACATGTCCGCCGC
CGCGGCGAGCGACACGAGCAGCAGCAGCGCTGCCGCCGCCGCCGCCAGCGACGTGGTGGTGGAGGCGCCCATCTCCGACGCGCTACAGGAAGGCTAGAGC
TTGCTAGCTAGGGAGAGGAGGGATGAGAGG