Detailed information on CNT30498134


BLAST search results

BLAST vs Swiss-Prot:
sp|P25776|ORYA_ORYSJ, E-value = 4e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30221493Digitaria exilisHordeum vulgare20.5632.6688.8981forward
CNT30553550Digitaria exilisOryza glaberrima33.2554.8187.79131forward
CNT30466088Digitaria exilisSaccharum spontaneum35.5352.0491.43140forward
CNT303678Digitaria exilisZea mays24.626.8192.7897forward
CNT30365808Digitaria exilisSorghum bicolor71.3233.5387.9281forward
CNT30584982Digitaria exilisEchinochloa crusgalli71.3216.8192.53281forward
CNT30116501Digitaria exilisOryza nivara36.2934.9684.62143forward
CNT30558531Digitaria exilisPanicum hallii31.9850.692.86126forward

Expression of CNT30498134

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MSTAAARETSSSSAAAASDVADEVPITALL*

>peptide 2 (98 aa)
AAALVLDLHDGALGPPVDGFRQLLVVGGLVPGAELLLPLRLVLDAESVVRPAVRGHPLGVHPPRLLLAALAVGHDRHVHRRGQGDQQQQRRCRERRRG*

>peptide 3 (72 aa)
PQLPWSLISTTAPLVLQSTDSGSSSLSAAWYLELSFFSLCGLFLTPRALYVLPCVAIHSAYIRRVSSSLRSP*

Sequence

>CNT30498134
CCGCAGCTGCCCTGGTCCTTGATCTCCACGACGGCGCCCTTGGTCCTCCAGTCGACGGATTCCGGCAGCTCCTCGTTGTCGGCGGCCTGGTACCTGGAGC
TGAGCTTCTTCTCCCTCTGCGGCTTGTTCTTGACGCCGAGAGCGTTGTACGTCCTGCCGTGCGTGGCCATCCACTCGGCGTACATCCGCCGCGTCTCCTC
CTCGCTGCGCTCGCCGTAGGACACGATCGACATGTCCACCGCCGCGGCCAGGGAGACCAGCAGCAGCAGCGCCGCTGCCGCGAGCGACGTCGCGGATGAG
GTGCCCATCACCGCGCTGCTCTGACTGACTAGCCGAGGAGGAGGAAGAAGAGGTGGATGAGAGAGCTGCGGAGTGAAGGGGGAGGTGGAGGACC