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Detailed information on CNT30109655


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677580Oryza longistaminataSetaria viridis24.7737.6793.8381reverse complement
CNT30522288Oryza longistaminataSetaria italica33.649.8389.09110reverse complement
CNT30295069Oryza longistaminataTriticum aestivum21.418.4192.8670reverse complement
CNT30223532Oryza longistaminataHordeum vulgare21.19.4792.7569reverse complement
CNT30392292Oryza longistaminataTriticum turgidum22.329.493.1573reverse complement
CNT301701Oryza longistaminataZea mays33.6416.5790.91110reverse complement
CNT30228593Oryza longistaminataAnanas comosus20.825.4785.2968reverse complement
CNT30348060Oryza longistaminataEragrostis tef33.6415.5890.91110reverse complement
CNT30361226Oryza longistaminataSorghum bicolor28.7512.491.4994reverse complement
CNT30149130Oryza longistaminataBrachypodium distachyon22.3214.1291.7873reverse complement
CNT30579117Oryza longistaminataEchinochloa crusgalli33.947.9290.99111reverse complement

Expression of CNT30109655

Peptides detected in this lncRNA

>peptide 1 (41 aa)
NVEGTRCDCCGKTTSRCGDAWSYPLNDLRSGTHTLLSITWR*

>peptide 2 (43 aa)
MLEKLWDDVVAGPRPETGLEKLRKAATTRPLVINKDGDGEASGD

Sequence

>CNT30109655
AAACGTGGAAGGTACTAGGTGTGATTGTTGCGGTAAGACGACCAGCCGGTGCGGTGACGCCTGGTCATATCCACTCAATGATTTAAGGAGTGGCACACAC
ACACTGCTCTCTATTACTTGGAGGTAGTAGTGAGTTGTTGTAAAGTTGCAAGAGAGAGATCAGTTAGTTGTTGCGTGGAAGCAGAGATCAGGAAGATGCT
GGAGAAGCTGTGGGACGACGTGGTGGCCGGGCCTCGACCGGAGACCGGCCTGGAGAAGCTCCGCAAGGCCGCTACTACCCGCCCCCTTGTCATCAACAAA
GATGGTGACGGCGAGGCGAGCGGGGAC