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Detailed information on CNT30579117


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30109655Echinochloa crusgalliOryza longistaminata7.9233.9490.99111reverse complement

Expression of CNT30579117

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MTRGREVVALRSFSSPVSGRGPATTSSHSFSSIFPSFPLSSSGEGFTP*

>peptide 2 (59 aa)
LQSTVSALVIIIKHGRNRHNTHTYTITLGKYLQMGVKLVHTYTKVALTGSPPHLAAGLR*

Sequence

>CNT30579117
CTCCAGTCCACGGTCTCTGCGCTGGTAATAATAATTAAACACGGAAGAAATAGGCACAATACGCACACATATACCATTACACTGGGAAAATATTTACAGA
TGGGAGTAAAGCTAGTACACACGTACACAAAGGTTGCCCTCACTGGCTCGCCACCACACTTAGCGGCCGGGCTGAGGTAAGTACTGTAGTAATTAAGCAT
TACTCACTCGATATCAATATATAACAGTGATAGGACAAAATAAACGGCAGTGTCATCTTTAGCCTCGGACAGCAACGCAGCAGCAGTTGCGTCCGTTTTA
GATAACCACAAGGACCAGCAAACACGGCCTGACAGAGACGCCGGGCCCTTCCTCGCTCATCGACCTCGTCGATCTCCTCGTCGATCCAATCCGATCAGAT
CTAGCGGTGGTTGCTCCCCGGGTGGAACACGCTGCGCCACACGTTGGCGGCGCCGCGCGGCGTCGTCGACGTCGGGGTCACCGGAGTCGCCGGCGTCGTC
GGGGTCGACGGCATCGACTGCGCTCGCTTGTAGCTGCTGCTGCTCCCGCCAGCGGCGCCTCCGTCCGCATCTTGAAGAACACAGTCACGTCCGCAGAGCG
TTAGTTGGTGAACAGACCAATTATATTATATCCTAAATAAAACGGTCTAGCTAGCACACGGTAATTTTTATATCCTGTGAAACATGCCAACGCGTCCGTA
ACCTTATGCGGGATTAATTTACCAGACTTTATGCTGGCAGCATGTTTTATTAGTTAAGATCAGATCATGTGTGCATATCTATACGTGCTTCATGTCTAGC
TAGTTCCAAATTGTTGCTAGTGCAAACTAGCGAGTATACCTTTGTCGATGACGAGGGGGCGGGAGGTGGTGGCCTTGCGGAGCTTCTCGAGCCCCGTCTC
CGGGCGAGGCCCGGCCACCACGTCGTCCCACAGCTTCTCCAGCATCTTCCCCTCCTTCCCTCTCTCTAGCTCCGGCGAAGGTTTTACTCCCTAAACGTCA
CTACCGAAAAAAGAGCACTGCACCGGAAAAGAGCGTCCGGGTACGAGAGAAAGCCGGTGGGCCTCTCTTAAACGATGGAGGCAGGGGTGTCCCGATACCA
CCGGAGTGACCATACCGCGCCAAGCGCCCAAGCGTCGGTACGTGACCTGTGACCACCTAAAAATGGCCCTGAACTCTCGAAAAAGCCGTGCCGGCAAGAG
AGGCGGGGGCGACTGACTCGATCCGGGCCGGTAATTTCAGCGCGGGGCACGAGCAGCAGCTTCGGATCCCTTGACCGGGCGGTGAGCGCACCCAGACGAC
GCAGCAGAGTGGATAAGGATGGAGGCATGGAGCGGAGTGGCGTCGGAGGATGGGCACGGGCACGTCACGCGTGGGCGGGTTGGTAGAGAAGACGAATCGG
C