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Detailed information on CNT30522288


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678277Setaria italicaSetaria viridis39.579.9396.83442forward
CNT30297131Setaria italicaTriticum aestivum9.6520.4589.81108forward
CNT30223727Setaria italicaHordeum vulgare10.2821.3487.83115forward
CNT30439030Setaria italicaAegilops tauschii6.6120.6189.1974forward
CNT30683966Setaria italicaTriticum urartu9.6520.0489.81108forward
CNT30721395Setaria italicaTriticum spelta9.6522.589.81108forward
CNT30361380Setaria italicaSorghum bicolor9.4747.5392.45106forward
CNT30109655Setaria italicaOryza longistaminata9.8333.6489.09110reverse complement

Expression of CNT30522288

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MERSYYTPSTSSHQRARRSLPLSGQADRVRGTDQVVVLSILLPSP*

Sequence

>CNT30522288
GAAGGATAAATAAAAAATTTCGGGAACAAGTAAAAAATTTCGGGAACAAGTTTTGAGAGATAAACGAAAAGTTTTGGGGACGGAGGGGTACACATCAAAG
GTTTGGAAACTAAACACGGAAGAAACAGTACGATTGACATATCCCATTACACGCAAGCAAATATTTACAGATGGAGAGAAGCTACTACACACCAAGCACA
AGTTCCCATCAGAGGGCCCGCCGGTCGCTACCACTCAGCGGCCAAGCTGATCGAGTCAGAGGAACTGACCAAGTAGTAGTACTAAGCATTTTACTCCCTA
GTCCATAACATAGGACAAAATTAAATAAAAGGCGAAGTCTCCAACCTCGGACAGCAACGCAGCCGTGGTACATGCGTTTTAGATAACCACAAGGACCAGC
AAACATGTGGCCTGACAGGGACCCGCCACCGCTCCTCCGTCGACCTCATCTCACCCGATCCGAGATCTAACGGTGGTTGCTCCCGGGGTGGAACACGCTG
CGCCACACGTTGTTGCCGCCGCGCGGCGTCGTCGACGACGACGGCGTCCCCGGCGTCGTCGGGGTCGACGGCATCGACTGCGTCCGCTTGTAGCTCCCGG
CAGCAGCAACGGCATCTTGGGAGCAAAGTTTTTTTTGGGGGGTTAGTTCTTAACTCAAGATCATCATCATACGTGTACAGCTTAACATGTCTAGGATGCT
CCGTTAATTAGTTTTTCTTTTAAACCATTTTTGGTCCTCGAGAAAGTATAACAAATCAAGCAGATCATGATTTCATGAGCCATCTTTTAAGCAGATCTGT
ACTAGTTGAGAGAGTCCGTCGTTAGACATCAGATCAGTTTGCATTGGTGCTTCATGTATCTTGATTGAGTTTTGTTCCAAACTGCTACCATAATAACTAG
TGGTAGAAAACCGCGCTACCTTTGTCGATGACGATCGGGCGGGAGGTGGCGGCCTTGCGGAGCTTCTCGAGCCCCGTCTCCGGGTGAGGCCCGGCCACCA
CGTCGTCCCACAGCTTCTCCAGCATCTTCGCCTTCCTCCAACAAAGGTTACTGCTGGCCACTGGCTTACTGCACTACTATGCTAACGAGAGGAAGAGCAC
CGCACCACCACAGTGTCCG