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Detailed information on CNT30295069


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677580Triticum aestivumSetaria viridis9.536.7492.4179forward
CNT30185854Triticum aestivumSecale cereale48.0851.7593400forward
CNT30223727Triticum aestivumHordeum vulgare19.8330.6191.52165forward
CNT30390919Triticum aestivumTriticum turgidum62.1482.72100517forward
CNT30662943Triticum aestivumTriticum dicoccoides60.183.0699.6500forward
CNT30228593Triticum aestivumAnanas comosus7.9324.7287.8866forward
CNT30683966Triticum aestivumTriticum urartu49.1675.88100409forward
CNT30721395Triticum aestivumTriticum spelta42.6773.96100355forward
CNT30361380Triticum aestivumSorghum bicolor9.535.4393.6779forward
CNT30109655Triticum aestivumOryza longistaminata8.4121.4192.8670reverse complement

Expression of CNT30295069

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MELTQSTHIHPSLASMQRAYRAKKIKLQALVDSSTKLKTNHMQPRTATYATQD*

>peptide 2 (39 aa)
MARGWVAAARRSLSRPVSGRGPATTSSHSLSSILCRSWI*

Sequence

>CNT30295069
GGAAAACTTGCTCTGAGGCTGTTATTGTCTTTACCATAGGTGGTTAAACATTGAGAAGACCACACCACACACACGAGAGAATTTACACACGCATGGAGCT
TACACAGAGCACACACATACACCCATCACTCGCTAGCATGCAGCGAGCATACCGAGCCAAGAAAATAAAGTTACAAGCACTAGTAGACAGTAGTACGAAG
CTGAAGACAAACCACATGCAGCCTCGGACAGCAACGTACGCTACGCAGGATTAGATAACCAAAAGAGCAGCAAACATGGCGGCGTCGCACAAGTTGTTGA
GCACCCTGCCTTCAGTTCTCTGGCCGACGGCTCTTATTTAGCGGTGGTTGCTCCCGGGGTGGAAAACGCTCCGCCACACGCTGCCGCCGCGCGGCGGCGT
GGACGACGACGGCGTCACCGGCGTGGTCGGGGTCGTCGGCATCGACGGCGACTGCTTAATCGCCTCCCCTGCAGCTGCACCTCCACCAACATCCATGTAA
ACCGCCGTCAGTTCACACAATAATAAACCCAACAGATCCTCCGGTTAAGCATCAAATCTTCTTCTGAAAACTACTCGTGCTAGTTCTTACGTTCTTCTCA
ACAGTTTCAGGCCATGTCGGTACCTCTGGACTAACGTATATAAACTGTACCTGTGTTGATGGCGAGGGGTTGGGTGGCGGCGGCCCGGCGGAGCTTGTCG
AGGCCCGTCTCCGGGCGAGGCCCGGCCACCACGTCGTCCCACAGCTTGTCCAGCATCCTGTGCAGAAGTTGGATCTGATCGGTGCAAGAACTAGTGTCAC
TCGCTTGTAGCACTACCACCGATAAGATCAAG