Detailed information on CNT30223532


BLAST search results

BLAST vs Swiss-Prot:
sp|O22611|DRM1_PEA, E-value = 5e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674772Hordeum vulgareSetaria viridis10.5629.7392.2177forward
CNT30392292Hordeum vulgareTriticum turgidum29.7727.9386.64217forward
CNT30228593Hordeum vulgareAnanas comosus8.6423.688.8963forward
CNT30361380Hordeum vulgareSorghum bicolor19.7564.5784.72144forward
CNT30109655Hordeum vulgareOryza longistaminata9.4721.192.7569reverse complement
CNT30149130Hordeum vulgareBrachypodium distachyon19.8928.0585.52145forward

Expression of CNT30223532

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MDHELAYVPVVDGGRVGLGAVEEVGAEALGGELVEARLRPRPGHHVVPQLVQHLVGGSDRCKNLCHVLACRVLP

>peptide 2 (58 aa)
RYQKKKELALRLLLSYHSRLNIEKTTPPTRENLHMERTQSTHIHPSLASMRRAKSKLR*

>peptide 3 (51 aa)
MASSQIEVVDRAPPSSSSLAVVAPGPGLVAVKPGHQTYARTLHRYYFHACC*

Sequence

>CNT30223532
AGGTATCAGAAAAAGAAAGAACTTGCTCTGAGGCTGTTATTATCTTACCATAGTCGGTTAAACATTGAGAAGACCACACCACCCACACGAGAGAATTTAC
ACATGGAGCGCACACAAAGTACACACATACACCCATCACTCGCTAGCATGCGGCGAGCAAAGAGCAAACTGAGGTAACAAAAGAAAGTTACAAGCACTAG
TATAGTAGTACTGCTACTAAGCTTAGGAGAAACTACATGCAGCCTCGGACAGCAACGTACGTACGCAGGATTTAGATAACCAAAAGAGCAGCAAACATGG
CGTCGTCCCAGATCGAAGTTGTCGATCGAGCACCCCCGTCTTCCTCTTCTTTAGCGGTGGTTGCTCCTGGTCCTGGTCTCGTCGCTGTAAAGCCTGGACA
TCAAACGTACGCACGTACGTTGCACCGTTATTATTTCCATGCATGCTGCTAACCCGTTCCAAGCCCCAGTAGACAGTGCTATCAAAAACCCATTTTATAT
TGCGAGATGGATCATGAGCTAGCGTACGTACCAGTCGTAGACGGTGGGAGAGTTGGGCTGGGGGCGGTCGAAGAGGTTGGCGCCGAGGCCCTTGGTGGCG
AGCTTGTCGAGGCCCGTCTCCGGCCGAGGCCCGGCCACCACGTCGTCCCACAGCTTGTCCAGCATCTTGTAGGTGGATCTGATCGGTGCAAGAACTTGTG
TCACGTACTAGCTTGTAGAGTACTGCCAC