Detailed information on CNT30392292


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677580Triticum turgidumSetaria viridis9.433.9594.5273forward
CNT30183720Triticum turgidumSecale cereale42.640.8191.84331forward
CNT30223532Triticum turgidumHordeum vulgare27.9329.7786.64217forward
CNT30228593Triticum turgidumAnanas comosus8.6225.0988.0667forward
CNT30361380Triticum turgidumSorghum bicolor18.1563.2390.78141forward
CNT30109655Triticum turgidumOryza longistaminata9.422.3293.1573reverse complement
CNT30149130Triticum turgidumBrachypodium distachyon18.2827.4794.37142forward

Expression of CNT30392292

Peptides detected in this lncRNA

>peptide 1 (32 aa)
CLLFSFINMVLLSKKNIPEKGKACSEAVIVLP*

>peptide 2 (55 aa)
MSQRTSRRRWGSWAAGGRRGWVAAALRSLSRPVSGRGPATTSSHSLSSILRRSWI*

>peptide 3 (30 aa)
MERTWQRYFFPHVLTICHVHPFQVPSRSCY*

>peptide 4 (62 aa)
MAASQKLLSTLSSSSADGSYLAVVAPGPGLVAVKPGHGTYVAALFFSPCFNYLPCSPVSSSQ*

>peptide 5 (30 aa)
MERTQSTHIHTHHSLACSEQTGIRKESYKH*

Sequence

>CNT30392292
ATTGTCTATTGTTTTCCTTCATAAATATGGTGTTATTGTCTAAGAAAAATATACCAGAAAAAGGAAAAGCTTGCTCTGAGGCTGTTATTGTCTTACCATA
GTAGGTGGTTAAACATTGAGAACACCACACCACACACACGAGAATTTACACATGGAGCGTACACAAAGTACACACATACACACCCATCACTCGCTAGCAT
GCAGTGAGCAGACCGGGATAAGAAAAGAAAGTTACAAGCACTAGTAGACAGTAGTACGAAGCTCAAGACAAACCACATGCAGCCTCGGACGGCAACGTAC
GCTATGCAGGATTAGATAACCAAAAGAGCAGCAAACATGGCGGCGTCGCAGAAGTTGTTGAGCACCCTCTCTTCTTCTTCGGCCGACGGCTCTTATTTAG
CGGTGGTTGCTCCTGGTCCTGGTCTCGTCGCTGTAAAGCCTGGACATGGAACGTACGTGGCAGCGTTATTTTTTTCCCCATGTTTTAACTATTTGCCATG
TTCACCCGTTTCAAGTTCCCAGTAGATCGTGTTATTAACACTGATATTATATTGTGAGATAGATCATGAGCCAGCGTACCAGTCGTAGACGGTGGGGGAG
TTGGGCTGCGGGCGGTCGAAGAGGTTGGGTGGCGGCCGCCCTGCGGAGCTTGTCGAGGCCCGTCTCCGGGCGAGGCCCGGCCACCACGTCGTCCCACAGC
TTGTCCAGCATCTTGCGCAGAAGTTGGATCTGATCGGTGCAAGAACTTGTGTCACTCGCTCGTACTACTACCCACCG