Detailed information on CNT30677580


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30295069Setaria viridisTriticum aestivum36.749.592.4179forward
CNT30392292Setaria viridisTriticum turgidum33.959.494.5273forward
CNT301701Setaria viridisZea mays42.3313.795.691forward
CNT30348060Setaria viridisEragrostis tef39.0711.995.2484forward
CNT30361226Setaria viridisSorghum bicolor42.3312.0195.691forward
CNT30109655Setaria viridisOryza longistaminata37.6724.7793.8381reverse complement
CNT30149130Setaria viridisBrachypodium distachyon33.9514.1293.1573forward
CNT30579664Setaria viridisEchinochloa crusgalli36.747.610079forward

Expression of CNT30677580

Peptides detected in this lncRNA

>peptide 1 (57 aa)
SRRRWGSWAAGGGGLAELLEPRLRVRPGHHVVPQLLQHLRLPPTKVTAGHWLTALLC*

Sequence

>CNT30677580
CCAGTCGTAGACGGTGGGGGAGTTGGGCTGCGGGCGGTGGCGGCCTTGCGGAGCTTCTCGAGCCCCGTCTCCGGGTGAGGCCCGGCCACCACGTCGTCCC
ACAGCTTCTCCAGCATCTTCGCCTTCCTCCAACAAAGGTTACTGCTGGCCACTGGCTTACTGCACTACTATGCTAACGAGAGGAAGAGCACCGCACCACC
AGAGTGTCCGGGTAC