Detailed information on CNT30228593


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FKV8|DRMH2_ARATH, E-value = 5e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675842Ananas comosusSetaria viridis23.222588.7162forward
CNT30295069Ananas comosusTriticum aestivum24.727.9387.8866forward
CNT30223532Ananas comosusHordeum vulgare23.68.6488.8963forward
CNT30392292Ananas comosusTriticum turgidum25.098.6288.0667forward
CNT301701Ananas comosusZea mays25.4710.2486.7668forward
CNT30109655Ananas comosusOryza longistaminata25.4720.885.2968reverse complement
CNT30150515Ananas comosusBrachypodium distachyon28.8438.1284.4277forward

Expression of CNT30228593

Peptides detected in this lncRNA

>peptide 1 (76 aa)
QSYTEGREPESAEMLLRGDLAMVMLRVTVTSIAGGAAMEEEEEEGEKEENLRSLPRPDSGRGPATVSSHSLSRRPI*

>peptide 2 (87 aa)
PIVYGRERAGIGRDAAARRSCDGDAAGDRDVNRRRRGHGGGGGRRREGGEFAELAEAGLRPGAGHRVVPQLVQKAHLIPLFLPQLVQ*

Sequence

>CNT30228593
CCAATCGTATACGGAAGGGAGAGAGCCGGAATCGGCAGAGATGCTGCTGCGCGGCGATCTTGCGATGGTGATGCTGCGGGTGACCGTGACGTCAATCGCC
GGCGGCGCGGCCATGGAGGAGGAGGAGGAAGAAGGCGAGAAGGAGGAGAATTTGCGGAGCTTGCCGAGGCCGGACTCCGGCCGGGGGCCGGCCACCGTGT
CGTCCCACAGCTTGTCCAGAAGGCCCATTTGATCCCTCTTTTTCTCCCACAGCTTGTCCAGTAGCTT