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Detailed information on CNT30348060


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677580Eragrostis tefSetaria viridis11.939.0795.2484forward
CNT30361380Eragrostis tefSorghum bicolor13.1741.794.6293forward
CNT30109655Eragrostis tefOryza longistaminata15.5833.6490.91110reverse complement

Expression of CNT30348060

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MSREMQMRQATHIPIVDRGRVGLRAVEYVCSKALGRQVAPRVEHAAPHV*

Sequence

>CNT30348060
AACGCACATATTTTTCCGGTAAGATGATGCTTCCGTTCAACTGTTCAAGTGACTGACTTCACTGCAAAAAGAGATCAGATCTTTTCGCAGCTGGTTTGGA
AAATTGAGGAGCCTAATTAGTAGTATATCCACTGCACCCTTATCCGTTTCATCAAACCATAACAATTTAGGATTGCACGCCATATAAACTAGTTACAGTG
CGTTATGTGTGGCCCCCGTCACTATCGGATGTTAGTTGGATTTTTATAATTCGCGAAATAAAAGATTTAATCTTTCTAGATCCAACTAAACATTCATCTG
TGTAGATCATTAGCCAGTAATACGATGCGACCGTTGATCATCTCTTAGCATGTCCCGGGAGATGCAGATGAGGCAGGCAACACACATACCAATCGTAGAC
CGTGGGCGAGTTGGGCTGCGGGCGGTCGAATATGTTTGCTCCAAGGCCCTTGGTCGCCAGGTTGCTCCCCGGGTGGAACACGCTGCGCCACACGTTTAAC
ACTACCCACCTTTGTTGATGACGAGCGGGCGGGACGTGGTGGCCTTGCGGAGCTTCTCGAGGCCGGTCTCCGGGTGAGGCCCCGCCACCACGTCGTCCCA
CAGCTTCTCCAGCATCTTCAACCTCGATCGATCACAACTCTGCTCTCCTTGCAAAGCAGAAGCACCCAAGGCACCGGGTGACTAAACTACTAACTGTGTC
CTGGCT