CANTATAdb - search

Detailed information on CNT301701

BLAST search results

BLAST vs Swiss-Prot:
sp|O22611|DRM1_PEA, E-value = 1e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30677580	Zea mays	Setaria viridis	13.7	42.33	95.6	91	forward
CNT30228593	Zea mays	Ananas comosus	10.24	25.47	86.76	68	forward
CNT30361380	Zea mays	Sorghum bicolor	14.16	42.15	95.74	94	forward
CNT30109655	Zea mays	Oryza longistaminata	16.57	33.64	90.91	110	reverse complement
CNT30579664	Zea mays	Echinochloa crusgalli	22.29	14.23	89.19	148	forward

Expression of CNT301701

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MTSGRAVVALRSFSRPVSGRGPATTSSHSLSSIF*

>peptide 2 (63 aa)
MASSLSIHLARSSGGCSPGGRRCATRCRRRAASSTTTTTTASPASSGSTASTAPACSCRRPRL*

Sequence

>CNT301701
TTTTTCCAACTAGTCACTACTATATACTAGGAGTGACGGCACATATATCACTCACTCCATAACATAGGTCAAATTAAACGGCGGAGACACCAGCAGAACA
AGAACAACAATACACAAACACAAGTATATATATAGTGATGACTAGCTATAATAGAGCATGCGTGCGTTTTAGATAACCACAAGGACCAGCAAACATGGCC
TCTTCACTGTCCATCCATCTCGCCCGATCTAGCGGTGGTTGCTCCCCGGGTGGAAGACGCTGCGCCACACGTTGCCGGCGCCGCGCGGCGTCGTCGACGA
CGACGACGACGACGGCGTCACCGGCGTCGTCGGGGTCGACGGCATCGACTGCGCCCGCTTGTAGCTGCCGCCGTCCGCGTCTTTAATTTACACATATTAT
TGTTAGTTAGAGTGGAGAGATCCATTCATTAATTTCCTACTGTTATTAGTTGCTTGCCGCTGTATAGCTCAGTAAGTACCTTTGTTGATGACGAGCGGGC
GGGCGGTGGTGGCCTTGCGGAGCTTCTCGAGGCCCGTCTCCGGGCGAGGCCCGGCCACCACGTCGTCCCACAGCTTGTCCAGCATCTTCTAATTCGCTCG
CCGCTTTCGACCTCACAAAACCACCAGGATGAACGGATCTAGAGCAACCGTCAGTAGCACCGCG