« Back to Brachypodium distachyon search


Detailed information on CNT30149130


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677580Brachypodium distachyonSetaria viridis14.1233.9593.1573forward
CNT30223532Brachypodium distachyonHordeum vulgare28.0519.8985.52145forward
CNT30392292Brachypodium distachyonTriticum turgidum27.4718.2894.37142forward
CNT30361380Brachypodium distachyonSorghum bicolor27.2763.2387.23141forward
CNT30109655Brachypodium distachyonOryza longistaminata14.1222.3291.7873reverse complement

Expression of CNT30149130

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MKRGALASAYGVPVINGGGVGLRAVEEVGWRRPCGAFRGPSPGEARLPRRPTAYPASWTQGDGDLGRCRSSCCC*

>peptide 2 (45 aa)
ACSKNQKPPTSFHGLQACGALNSKLQTQELPVRFKKKNYKYCNCN*

Sequence

>CNT30149130
AGCCTGTTCAAAAAATCAAAAGCCGCCAACGTCATTCCATGGTTTACAGGCCTGTGGTGCTTTGAATTCTAAACTACAAACACAGGAACTCCCTGTCCGT
TTCAAAAAAAAAAACTATAAATACTGCAATTGCAACTGATTTCATCGTAGATTCACTATCAAGCTTTCTTCAGCCCTGCCGTTTAATTTGCAGCGACAGG
TGACAGCGATATGCTCTGCTAGTACTAGTATCTAGATGAAGCAGAGGAATTTCATAATCGTAATATGAAGAGAGGAGCACTAGCGTCGGCGTACGGCGTA
CCAGTCATAAACGGTGGGGGTGTTGGGCTGCGGGCGGTCGAAGAGGTTGGGTGGCGGCGACCCTGCGGAGCTTTTCGAGGCCCGTCTCCGGGCGAGGCCC
GGCTACCACGTCGTCCCACAGCTTATCCAGCATCTTGGACTCAAGGAGATGGAGATCTAGGTCGATGCAGGAGCTCTTGTTGTTGCTAGCTGAGCTGCTA
CCTTGGCAAAATATCAA