Detailed information on CNT30104459


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30194117Oryza rufipogonSecale cereale31.758.6697.37114forward
CNT30220156Oryza rufipogonHordeum vulgare22.286.3697.580reverse complement
CNT30553968Oryza rufipogonOryza glaberrima50.79.6598.35182forward
CNT30139987Oryza rufipogonLolium perenne42.919.1390.26154forward
CNT30231593Oryza rufipogonAnanas comosus28.6913.0787.38103forward
CNT30369893Oryza rufipogonOryza glumipatula44.0135.3597.47158forward
CNT30108418Oryza rufipogonOryza longistaminata44.0134.5798.1158forward
CNT30575540Oryza rufipogonOryza barthii50.9744.5396.72183reverse complement
CNT30499024Oryza rufipogonDigitaria exilis23.965.6596.5186forward
CNT30116377Oryza rufipogonOryza nivara44.0142.2598.1158forward

Expression of CNT30104459

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MTRQNREKKSFVFWANKIGRKKFSFFIFIKNYLNFFQSGCEV*

>peptide 2 (41 aa)
MNHSFIFFLDPLYLFCVPDTRINNIRRIRIILIEITGAFYVL

Sequence

>CNT30104459
ATACTAGAGCCACGATGATTGAGTCTCAAGCTAAACAAAAGGCAAGGGTTCTTCGAATAAGAACCGCTTGATGATCATTTATTGAATCGGTGTAATGACT
CGACAAAATCGAGAGAAAAAAAGTTTTGTTTTTTGGGCAAACAAAATTGGAAGGAAGAAATTTTCTTTTTTTATTTTTATTAAGAACTACTTGAATTTTT
TTCAGTCTGGTTGTGAGGTCTGAATAGTTAATATGAATCATAGTTTCATTTTTTTTCTTGATCCACTCTATCTATTTTGTGTTCCAGATACTAGAATAAA
TAATATCCGACGAATTAGAATCATCTTGATAGAGATAACAGGTGCTTTCTATGTATTAT