Detailed information on CNT30116377


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3090241Oryza nivaraSolanum tuberosum38.510.9381.25144forward
CNT30511491Oryza nivaraSolanum lycopersicum38.516.7881.94144reverse complement
CNT30231593Oryza nivaraAnanas comosus41.9819.9288.54157forward
CNT30369893Oryza nivaraOryza glumipatula72.7360.8598.53272forward
CNT30108418Oryza nivaraOryza longistaminata72.7359.5299.26272forward
CNT30104459Oryza nivaraOryza rufipogon42.2544.0198.1158forward
CNT30575540Oryza nivaraOryza barthii72.9966.4297.44273reverse complement

Expression of CNT30116377

Peptides detected in this lncRNA

>peptide 1 (30 aa)
RSSKSMQNPNFGQTKLEGRNFLFLFLLRTT*

Sequence

>CNT30116377
CTAGATCAAGCAAATCCATGCAAAATCCCAATTTTGGGCAAACAAAATTGGAAGGAAGAAATTTTCTTTTTTTATTTTTATTAAGAACTACTTGATTTTT
TTCAGTCTGGTTGCGAGGTCTGAATAGTTAATATGAATCATAGTTTCATTTTTTTTTCTTGATCCACTCTATCTATTTCGTGTTCCAGATACTAGAATAA
ATAATATCCGACGAATTAGAATCATCTTGATAGAGATAACAGGTGCTTTCTATGTATTATCAATAGGAGCAAATTCTAACAAGTCACACACTCATATTCC
AGAGATACCGAAACCAAAAAAAATCACGGTCGAACTACCAGAATGTCTAGAAATATAGAGCTTAAAGTAGAAAG