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Detailed information on CNT30231593


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2PMQ6|PSBH_SOYBN, E-value = 1e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730483Ananas comosusCorchorus capsularis25.8946.2691.18204forward
CNT30401838Ananas comosusBeta vulgaris28.358.0787223forward
CNT30629037Ananas comosusVigna unguiculata22.8433.482.22180forward
CNT30194600Ananas comosusPisum sativum32.9933.2987.69260forward
CNT3045662Ananas comosusPrunus dulcis21.1913.7185.63167reverse complement
CNT3090241Ananas comosusSolanum tuberosum20.4312.2287.58161forward
CNT30177378Ananas comosusSecale cereale36.1754.2985.61285forward
CNT30283943Ananas comosusTriticum aestivum28.4346.8685.71224forward
CNT30220592Ananas comosusHordeum vulgare8.2526.4289.2365forward
CNT30511491Ananas comosusSolanum lycopersicum20.691987.12163reverse complement
CNT30349424Ananas comosusEragrostis tef13.0723.5784.47103forward
CNT30369893Ananas comosusOryza glumipatula24.2442.7388.48191forward
CNT30574487Ananas comosusVitis vinifera55.4670.8385.13437forward
CNT3053422Ananas comosusAmborella trichopoda34.911.2888275reverse complement
CNT30108418Ananas comosusOryza longistaminata24.2441.7987.96191forward
CNT30104459Ananas comosusOryza rufipogon14.2131.287.5112forward
CNT30575540Ananas comosusOryza barthii27.2852.3187.91215reverse complement
CNT30116377Ananas comosusOryza nivara24.2451.0787.96191forward

Expression of CNT30231593

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MNHSSNISFLDLFYIFRAPDTRINIRRGRIILIEITGPFYVLSIGSIITSHTLIFRKYRNK*

>peptide 2 (29 aa)
VGIMVDARDQVTIISFSSLMLSFSIFPAK*

Sequence

>CNT30231593
TGTGGGTATAATGGTAGATGCCCGAGACCAAGTTACTATTATTTCTTTCTCCTCCCTCATGTTGAGTTTTTCAATTTTTCCCGCTAAATGATTAGCTACA
AAAGGATTTTTTTTTAGTGAACGTGTCACAGCTGATTACTCCTTTTTTTTTACATTTTAAAGATTGGCATTCTATGTCCAATATCTCGATCTAAGTNAGG
TATGAATCATAGTTCAAATATTTCTTTTCTTGATCTATTCTATATATTCCGTGCTCCAGATACTAGAATAAATATCCGACGAGGTAGAATCATCTTGATA
GAGATAACAGGTCCATTCTATGTATTATCAATAGGATCAATTATAACAAGTCACACACTCATATTCCGCAAATACCGAAACAAATAAATTCCACGGTCGA
ACTACCAGAATAGAATGGTCTAGAAATCCAAGTCTAAAGTAATTTTTTCTTTGATTGAAAGACTAGGACTTCATAGTTCTTATAAACCTAACTCATTGAA
ATTCCATCCAGTAAAACGGAAGAATTATAAATTTCCAAAATAATAGATAGGAATATCGCAAATAGAGCCATTGCGACCCCCATAAGTGGTGTAGTCCCCC
ATCCCGGAGCTACTTTACCATATTCCGAATTCAATGGTTTCAATAAATCCCCTACAGTAGTTCGTCTTGGCCCAGATCTAGAACTATCCTCAACGGTTTG
TGTAGCCATAAATCCTATTTAACGATTGGTTGAGATCTGTTGACTTTGTATACTATTCCGGTGTAGTTGTAAATAAACGATCTTATCG