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Detailed information on CNT30220156


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676816Hordeum vulgareSetaria viridis9.352.9497.44117reverse complement
CNT30195004Hordeum vulgarePisum sativum8.1135.2994.12102forward
CNT30304119Hordeum vulgareTriticum aestivum7.4726.8610094forward
CNT30649878Hordeum vulgareRosa chinensis5.6432.4291.5571forward
CNT30720298Hordeum vulgareTriticum spelta8.950.68100112reverse complement
CNT30425623Hordeum vulgarePapaver somniferum10.7329.6194.81135forward
CNT30104459Hordeum vulgareOryza rufipogon6.3622.2897.580reverse complement

Expression of CNT30220156

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MDISAIEIPGELYICVLIRPFTIGFRTAMTTEPSKIVITTQEVMSTWA*

>peptide 2 (46 aa)
MRTQLRCIARIHVPYLKRVDLRAPYPQGKSNPRCLLEREMSLTTRR*

>peptide 3 (55 aa)
MRGFNSRRSPIALLQIPKMQFSIFLTSVERLIHSDRYEDPTPLHCQNPCSIFEAG*

>peptide 4 (60 aa)
AHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVHYTDSISINDYQAVLIRRTLAFCLA*

Sequence

>CNT30220156
GCTCATTTTGTCTGGGCCTTCAGTTTAATGTTTTTATTCAGCGGCCGTGGTTATTGGCAAGAACTCATTGAATCTATCGTTTGGGCTCATAACAAATTAA
AAGTTCATTACACTGATTCAATTTCAATAAATGATTATCAAGCGGTTCTTATTCGAAGAACCCTTGCCTTTTGTTTAGCTTGAGACTAAATCATCGTGGC
TCGTAGAACCCGTCGGGGAGGCCTGAGAGGCGGTGGTTTACCCTGTGGCGGATGTCAGCGGTTCGAGTCCGGCCCAAAGCCAATCCCAGGGAACAGTAAA
GCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGCCCCATCGTCTCACTGGCCGACCTTGACCCCTGTTATTTTGGGGGGGCGGATGTAGCCAAGTGGAT
CAAGGCAGTGGATTGTGAATCCACCATGCGCGGGTTCAATTCCCGTCGTTCGCCCATCGCATTATTGCAAATTCCAAAAATGCAATTTTCCATATTCCTG
ACCTCTGTAGAAAGACTGATTCATTCGGATCGATATGAGGACCCAACTCCGTTGCATTGCCAGAATCCATGTTCCATATTTGAAGCGGGTTGACCTCCGT
GCTCCCTACCCCCAGGGGAAGTCGAATCCCCGCTGCCTCCTTGAAAGAGAGATGTCCTTAACCACTAGACGATAGGGGCGTCACTAGACGATAGGGCCAT
ATACAACCGCCCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTGGGGAAAGCTTGAACCCAAGTCCTACAGTGATGGATATAAGCGC
AATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTGGATTCCGAACAGCTATGACAACTGAACCTAGCAAGATAGTAATT
ACGACCCAAGAAGTGATGAGTACCTGGGCATGAATTTGAAAACCTCCTATTTGCCAATAGAAGTGTTGGCCCTCTGACTCCCCCACTCCAGTCGTTGCTT
TTCTTTCTGGCCGAGACAGCGACGGGTTCTCCACCCATACGGGGATGGAGCGACAGAAGTATGGAAATAGGATAAGGTAGCGGCGAGACGAGCCGTTTAA
ATAGGATGCCTCAGCTGCATACATCACTGCACTTCCACTTGACACCTATTTAAACGGCTCGTCTCGCCGCTACGAAGTCAGTAGGAGTACTATTATGAAG
AAATTCAGACCTCGAGCTCGAGGACGTAGTTTCCCTATAAAAAAAAGCATGTGTCATA