Detailed information on CNT3094411


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547627Solanum tuberosumIpomoea triloba20.135.9393.3360forward
CNT30617951Solanum tuberosumSesamum indicum37.2511.7384.68111reverse complement
CNT30506771Solanum tuberosumNicotiana attenuata100.3498.0388.29299reverse complement
CNT30541676Solanum tuberosumBrassica napus26.5125.987.3479reverse complement
CNT30509808Solanum tuberosumSolanum lycopersicum10098.0394.63298reverse complement
CNT30172426Solanum tuberosumTrifolium pratense21.8121.5287.6965reverse complement
CNT30261746Solanum tuberosumBrassica rapa26.8534.0486.2580reverse complement
CNT30612154Solanum tuberosumArabis alpina23.4923.0387.1470forward
CNT30597892Solanum tuberosumFraxinus excelsior36.9136.0785.45110forward
CNT30644410Solanum tuberosumCannabis sativa37.9241.3984.07113forward
CNT3053206Solanum tuberosumAmborella trichopoda20.4719.9388.5261reverse complement

Expression of CNT3094411

Peptides detected in this lncRNA

>peptide 1 (34 aa)
SGGLIRQPIRFLLNLESTGSLSFHCTEQELFVAL*

Sequence

>CNT3094411
AAAGTGGTGGTTTAATTAGGCAGCCCATCAGGTTTTTGTTGAACTTGGAGAGCACTGGCTCGTTATCCTTCCACTGCACAGAGCAGGAGCTGTTCGTTGC
TCTGTGAAACCAGCCTCACGCAGTCCACCCCACTCTAAGAGCCAAGCAGCCCATACTTTCGTCTGGACCACGTGACTCAACTCCGTGCTTGGATAGGGCA
GGCCAGACTAATGCCAACCAAAGTCCAGCCATCAAGAACAGCCTAACATCCCACCACATTGTTGCCCCCACTTAGGTTACAAGCCCGCGTTACAAGGC